YRC Public Data Repository - Protein Structure Prediction

Protein:	CSE4
Organism:	Saccharomyces cerevisiae
Length:	137 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSE4.

Description	E-value	Query Range	Subject Range
H3_ACRFO - Histone H3 OS=Acropora formosa PE=3 SV=2	7.0E-47	[2..136]	[4..135]
gi\|386772 - gi\|386772\|gb\|AAA52651.1\| histone H3 [Homo sapiens]	1.0E-46	[2..135]	[4..134]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-46	[2..136]	[3..134]
HGNC:20503\|MIM:1... - cluster 2, H3c H32_MOUSE - Histone H3.2 OS=Mus musculus GN=Hist1h3b PE=1 SV=2 SINCAMP00000026397 - len=136 SINCAMT00000026656 SINCAMG00000017308 gi\|114559163, gi... - gi\|114559163\|ref\|XP_001166180.1\| PREDICTED: similar to Histone 2, H3c1 [Pan troglodytes], gi\|1145591... gi\|193582486, gi... - gi\|239791866\|dbj\|BAH72344.1\| ACYPI007201 [Acyrthosiphon pisum], gi\|193676675\|ref\|XP_001951147.1\| PRE... gi\|126309359, gi... - gi\|126313638\|ref\|XP_001364839.1\| PREDICTED: similar to histone protein Hist2h3c1 [Monodelphis domest... gi\|167874003, gi... - gi\|170059750\|ref\|XP_001865497.1\| histone H3.2 [Culex quinquefasciatus], gi\|170058996\|ref\|XP_00186516... H32_ICTBU - Histone H3.2 OS=Ictiobus bubalus PE=1 SV=2 cds.comp28276_c0... - comp28276_c0_seq1\|g.879 ORF comp28276_c0_seq1\|g.879 comp28276_c0_seq1\|m.879 type:complete len:137 (... H32_PORAF - Histone H3.2 OS=Poroderma africanum PE=1 SV=2 gi\|89520694 - gi\|89520694\|gb\|ABD76393.1\| histone H3 [Chlamys farreri] tr\|M3X7H5\|M3X7H5... - Histone H3 OS=Felis catus PE=3 SV=1 His3:CG33851-PA,... - The gene His3:CG33851 is referred to in FlyBase by the symbol Dmel\His3:CG33851 (CG33851, FBgn005385... gi\|7415984 - gi\|7415984\|dbj\|BAA93628.1\| histone H3 [Drosophila orena] gi\|149574029, gi... - gi\|149627537\|ref\|XP_001509264.1\| PREDICTED: similar to histone protein Hist2h3c1 [Ornithorhynchus an... H3_CHITH - Histone H3 OS=Chironomus thummi thummi PE=3 SV=2 gi\|297563, gi\|7083 - gi\|7083\|emb\|CAA39771.1\| histone H3 [Chironomus thummi], gi\|297563\|emb\|CAA51324.1\| histone H3 [Chiron... H3_PLADU - Histone H3 OS=Platynereis dumerilii PE=3 SV=2 gi\|2564107 - gi\|2564107\|gb\|AAC15916.1\| histone H3 [Chaetopterus variopedatus] gi\|95102752, gi\|... - gi\|95102752\|gb\|ABF51317.1\| histone H3 [Bombyx mori], gi\|114051013\|ref\|NP_001040399.1\| histone H3 [Bo... gi\|33114096 - gi\|33114096\|gb\|AAP94666.1\| histone H3 [Mytilus trossulus] gi\|33114057, gi\|... - gi\|33114098\|gb\|AAP94667.1\| histone H3 [Mytilus galloprovincialis], gi\|33114057\|gb\|AAP94646.1\| histon... gi\|23304758, gi\|... - gi\|33114100\|gb\|AAP94668.1\| histone H3 [Mytilus edulis], gi\|23304766\|emb\|CAD37824.1\| histone H3 [Myti... gi\|47212273, gi\|... - gi\|47225208\|emb\|CAF98835.1\| unnamed protein product [Tetraodon nigroviridis], gi\|47225171\|emb\|CAF987... gi\|14269420 - gi\|14269420\|gb\|AAK58062.1\|AF378198_2 histone H3 [Rhynchosciara americana] gi\|21307835 - gi\|21307835\|gb\|AAL54861.1\| histone H3 [Aplysia californica] H32_MUSPA - Histone H3.2 OS=Mus pahari GN=H312 PE=2 SV=3 H3_DROHY - Histone H3 OS=Drosophila hydei GN=His3 PE=3 SV=2 gi\|162319678, gi... - gi\|208966476\|dbj\|BAG73252.1\| Histone H3.1 [synthetic construct], gi\|182888471\|gb\|AAI60303.1\| Histone... gi\|110749619, gi... - ref\|XP_396398.1\| similar to CG31613-PA [Apis mellifera], ref\|XP_394916.1\| similar to CG31613-PA [Ap... gi\|156553440, gi... - gi\|156553442\|ref\|XP_001599419.1\| PREDICTED: similar to histone protein Hist2h3c1 [Nasonia vitripenni... H32_ONCMY - Histone H3.2 OS=Oncorhynchus mykiss PE=1 SV=2 gi\|156371427, gi... - gi\|156603270\|ref\|XP_001618804.1\| hypothetical protein NEMVEDRAFT_v1g227771 [Nematostella vectensis],... H32_XENLA - Histone H3.2 OS=Xenopus laevis PE=1 SV=2 gi\|149760358 - gi\|149760358\|ref\|XP_001500143.1\| PREDICTED: similar to His3:CG31613 CG31613-PA [Equus caballus] H32_DANRE - Histone H3.2 OS=Danio rerio GN=zgc:113984 PE=2 SV=3 gi\|157818935, gi... - gi\|62663579\|ref\|XP_344596.2\| PREDICTED: similar to CG31613-PA [Rattus norvegicus], gi\|62644032\|ref\|X... H32_XENTR - Histone H3.2 OS=Xenopus tropicalis GN=TGas081o10.1 PE=2 SV=3 AGAP003910-PA, A... - histone H3\|protein_coding\|2R:46054336:46054746:1\|gene:AGAP003910, histone H3\|protein_coding\|2L:83799... H32_BOVIN - Histone H3.2 OS=Bos taurus PE=1 SV=2 gi\|73981514 - gi\|73981514\|ref\|XP_850744.1\| PREDICTED: similar to CG31613-PA [Canis familiaris] HIST2H3A, HIST2H... - histone cluster 2, H3d, histone cluster 2, H3a, histone cluster 2, H3c gi\|195559903, gi... - gi\|7415972\|dbj\|BAA93622.1\| histone H3 [Drosophila simulans], gi\|195564071\|ref\|XP_002077567.1\| GD1575... gi\|542143434\|ref... - PREDICTED: histone H3.2-like [Zonotrichia albicollis] gi\|195368825, gi... - gi\|7415974\|dbj\|BAA93623.1\| histone H3 [Drosophila sechellia], gi\|195374352\|ref\|XP_002046072.1\| GM162... gi\|7415976 - gi\|7415976\|dbj\|BAA93624.1\| histone H3 [Drosophila mauritiana] gi\|7415978 - gi\|7415978\|dbj\|BAA93625.1\| histone H3 [Drosophila teissieri] gi\|7415980 - gi\|7415980\|dbj\|BAA93626.1\| histone H3 [Drosophila yakuba] gi\|198424617, gi... - gi\|198424617\|ref\|XP_002129014.1\| PREDICTED: similar to His3:CG31613 CG31613-PA [Ciona intestinalis],... gi\|190584606, gi... - gi\|196005397\|ref\|XP_002112565.1\| conserved hypothetical protein [Trichoplax adhaerens], gi\|190584606... ENSOCUP000000165... - pep:novel chromosome:oryCun2:13:42188651:42189061:1 gene:ENSOCUG00000023811 transcript:ENSOCUT000000... gi\|224094626, gi... - gi\|224170887\|ref\|XP_002193332.1\| PREDICTED: similar to predicted protein [Taeniopygia guttata], gi\|2... gi\|210093024, gi... - gi\|229280982\|gb\|EEN51747.1\| hypothetical protein BRAFLDRAFT_64865 [Branchiostoma floridae], gi\|22928... gi\|157169153 - gi\|157169153\|gb\|ABV25913.1\| histone H3 [Venerupis decussatus] gi\|157169143 - gi\|157169143\|gb\|ABV25908.1\| histone H3 [Venerupis philippinarum] gi\|225711398 - gi\|225711398\|gb\|ACO11545.1\| Histone H3 [Caligus rogercresseyi] gi\|158958244 - gi\|158958244\|gb\|ABW86653.1\| histone H3 [Anthonomus grandis] gi\|225718794 - gi\|225718794\|gb\|ACO15243.1\| Histone H3 [Caligus clemensi] gi\|157169163 - gi\|157169163\|gb\|ABV25918.1\| histone H3 [Venerupis pullastra] gi\|194773740, gi... - gi\|194780514\|ref\|XP_001967892.1\| GF21608 [Drosophila ananassae], gi\|194778927\|ref\|XP_001967879.1\| GF... gi\|194036304 - gi\|194036304\|ref\|XP_001926741.1\| PREDICTED: similar to His3:CG31613 CG31613-PA [Sus scrofa] gi\|195066347, gi... - gi\|195103866\|ref\|XP_001998117.1\| GH24949 [Drosophila grimshawi], gi\|195099963\|ref\|XP_001997993.1\| GH... tr\|G3HDS5\|G3HDS5... - Histone H3 OS=Cricetulus griseus GN=H671_1g3063 PE=3 SV=1 gi\|194878012, gi... - gi\|194947493\|ref\|XP_001983140.1\| GG13008 [Drosophila erecta], gi\|194947426\|ref\|XP_001983139.1\| GG129... gi\|194102068, gi... - gi\|195190129\|ref\|XP_002029490.1\| GL19701 [Drosophila persimilis], gi\|195188238\|ref\|XP_002029392.1\| G... gi\|193915373, gi... - gi\|195140260\|ref\|XP_002012683.1\| GI12713 [Drosophila mojavensis], gi\|195139058\|ref\|XP_002012640.1\| G... gi\|195458148, gi... - gi\|195468736\|ref\|XP_002076069.1\| GK21132 [Drosophila willistoni], gi\|195458148\|ref\|XP_002075740.1\| G... gi\|195403914, gi... - gi\|195414707\|ref\|XP_002060571.1\| GJ16113 [Drosophila virilis], gi\|195409902\|ref\|XP_002060537.1\| GJ17... gi\|662217929\|ref... - PREDICTED: histone H3 [Diaphorina citri], PREDICTED: histone H3 [Diaphorina citri], PREDICTED: histo... H32_CAIMO - Histone H3.2 OS=Cairina moschata PE=2 SV=2 H3_URECA - Histone H3 OS=Urechis caupo PE=1 SV=2 H3_TIGCA - Histone H3 OS=Tigriopus californicus PE=3 SV=2 gi\|38564131 - gi\|38564131\|dbj\|BAD02415.1\| histone 3 [Drosophila takahashii] gi\|38564133 - gi\|38564133\|dbj\|BAD02416.1\| histone 3 [Drosophila ficusphila] gi\|38564135 - gi\|38564135\|dbj\|BAD02417.1\| histone 3 [Drosophila immigrans] gi\|38564137 - gi\|38564137\|dbj\|BAD02418.1\| histone 3 [Drosophila lutescens] gi\|144226137, gi... - gi\|38564139\|dbj\|BAD02419.1\| histone 3 [Drosophila americana], gi\|144226137\|dbj\|BAF56193.1\| histone 3... H32_CHICK - Histone H3.2 OS=Gallus gallus GN=H3-I PE=1 SV=2 gi\|157020956, gi... - gi\|57964328\|ref\|XP_560604.1\| ENSANGP00000025641 [Anopheles gambiae str. PEST], gi\|55246559\|gb\|EAL420... gi\|108880598, gi... - gi\|157138404\|ref\|XP_001657279.1\| histone H3 [Aedes aegypti], gi\|157138394\|ref\|XP_001657274.1\| histon... gi\|212516127, gi... - gi\|242020966\|ref\|XP_002430918.1\| histone H3 [Pediculus humanus corporis], gi\|242020948\|ref\|XP_002430... gi\|91095407, gi\|... - gi\|91095407\|ref\|XP_966487.1\| PREDICTED: similar to His3:CG31613 CG31613-PA [Tribolium castaneum], gi... ENSCJAT00000043164 - null gi\|109015967, gi... - gi\|109020395\|ref\|XP_001084245.1\| PREDICTED: similar to CG31613-PA [Macaca mulatta], gi\|109015967\|ref...	2.0E-46	[2..136]	[4..135]
gi\|255581420, gi... - gi\|255581420\|ref\|XP_002531518.1\| histone h3, putative [Ricinus communis], gi\|255545798\|ref\|XP_002513... gi\|357110657\|ref... - PREDICTED: histone H3.3-like isoform 2 [Brachypodium distachyon], PREDICTED: histone H3.3-like isofo... gi\|224814382 - gi\|224814382\|gb\|ACN65412.1\| histone 3.2 [Pteris vittata] gi\|92870265, gi\|... - gi\|92880830\|gb\|ABE85854.1\| Histone core [Medicago truncatula], gi\|92873912\|gb\|ABE82253.1\| Histone H3... gi\|224097140, gi... - gi\|224097140\|ref\|XP_002310848.1\| histone H3 [Populus trichocarpa], gi\|224093720\|ref\|XP_002309961.1\| ... gi\|116779721, gi... - gi\|224286639\|gb\|ACN41024.1\| unknown [Picea sitchensis], gi\|224284828\|gb\|ACN40144.1\| unknown [Picea s... gi\|118489220 - gi\|118489220\|gb\|ABK96416.1\| unknown [Populus trichocarpa x Populus deltoides] gi\|192910840, gi... - gi\|192910874\|gb\|ACF06545.1\| histone H3 [Elaeis guineensis], gi\|192910840\|gb\|ACF06528.1\| histone H3 [... gi\|212721898, gi... - gi\|238013324\|gb\|ACR37697.1\| unknown [Zea mays], gi\|212721898\|ref\|NP_001131417.1\| hypothetical protei... gi\|106879571 - gi\|106879571\|emb\|CAJ38369.1\| histin H3 [Plantago major] gi\|167998945, gi... - gi\|167999225\|ref\|XP_001752318.1\| histone H3 [Physcomitrella patens subsp. patens], gi\|167999057\|ref\|... H33_CAPAN - Histone H3.3 OS=Capsicum annuum PE=2 SV=3 H33_MEDSA - Histone H3.3 OS=Medicago sativa PE=1 SV=2 gi\|1435157, gi\|1... - gi\|151413347\|gb\|ABS11142.1\| histone H3 [Solanum lycopersicum], gi\|1435157\|emb\|CAA58445.1\| histone H3... H33_GOSHI - Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV=3 H33_ORYCO - Histone H3.3 OS=Oryza coarctata PE=2 SV=3 H33_PINPS - Histone H3.3 OS=Pinus pinaster PE=2 SV=3 H33_LOLTE - Histone H3.3 OS=Lolium temulentum PE=2 SV=2 H33_ARATH - Histone H3.3 OS=Arabidopsis thaliana GN=HTR4 PE=1 SV=2 H33_VITVI - Histone H3.3 OS=Vitis vinifera PE=2 SV=3 H33_ORYSJ - Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3 PE=1 SV=2 PGSC0003DMP40005... - PGSC0003DMT400009656, PGSC0003DMT400041662, PGSC0003DMT400043254, PGSC0003DMT400079216 gi\|115394199 - gi\|115394199\|gb\|ABI97039.1\| histone H3 [Robinia pseudoacacia] H33_ORYSA - Histone H3.3 (H3.2) - Oryza sativa (Rice) H33_ORYSI - Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_011536 PE=3 SV=1 gi\|144953503 - gi\|144953503\|gb\|ABP04114.1\| histone 3 [Lemna minor] gi\|62642117 - gi\|62642117\|gb\|AAX92697.1\| histone 3 [Picea abies] H33_LOLMU - Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=3 gi\|72398499, gi\|... - gi\|72398501\|gb\|AAZ72656.1\| histone H3.2 [Craterostigma plantagineum], gi\|72398499\|gb\|AAZ72655.1\| his... H33_TOBAC - Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1 mgf001690m, mgf0... - null, null, null, null gi\|241915979, gi... - gi\|242094532\|ref\|XP_002437756.1\| hypothetical protein SORBIDRAFT_10g002040 [Sorghum bicolor], gi\|242... gi\|255625589 - gi\|255625589\|gb\|ACU13139.1\| unknown [Glycine max]	2.0E-46	[2..136]	[4..135]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METEVPAPVR THSYALDRYV RQKRREKQRK QSLKRVEKKY TPSELALYEI RKYQRSTDLL  60
   61 ISKIPFARLV KEVTDEFTTK DQDLRWQSMA IMALQEASEA YLVGLLEHTN LLALHAKRIT 120
  121 IMKKDMQLAR RIRGQFI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	288.54902
Match:	1eqzC_
Description:	Histone H3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits