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View Structure Prediction Details

Protein: VPS24
Organism: Saccharomyces cerevisiae
Length: 224 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS24.

Description E-value Query
Range
Subject
Range
gi|125532355 - gi|125532355|gb|EAY78920.1| hypothetical protein OsI_34021 [Oryza sativa Indica Group]
gi|37535360, gi|... - gi|37535360|ref|NP_921982.1| hypothetical protein [Oryza sativa (japonica cultivar-group)], gi|31432...
1.0E-31 [7..224] [4..211]
gi|16876827, gi|... - gi|20127558|ref|NP_057494.2| chromatin modifying protein 5 [Homo sapiens], gi|16876827|gb|AAH16698.1...
3.0E-31 [1..206] [1..210]
CHMP5_MOUSE - Charged multivesicular body protein 5 OS=Mus musculus GN=Chmp5 PE=1 SV=1
CHMP5_RAT - Charged multivesicular body protein 5 OS=Rattus norvegicus GN=Chmp5 PE=2 SV=1
3.0E-31 [1..206] [1..210]
VPS24 - One of four subunits of the endosomal sorting complex required for transport III (ESCRT-III); forms ...
gi|207343483 - gi|207343483|gb|EDZ70931.1| YKL041Wp-like protein [Saccharomyces cerevisiae AWRI1631]
VPS24_YEAST - Vacuolar protein-sorting-associated protein 24 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S28...
6.0E-30 [1..224] [1..224]
VPS2C_ARATH - Vacuolar protein sorting-associated protein 2 homolog 3 OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1
9.0E-30 [7..223] [4..210]
CE06928 - WBGene00016497 status:Predicted TR:Q22916 protein_id:AAC25860.1
2.0E-29 [1..209] [49..262]

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Predicted Domain #1
Region A:
Residues: [1-224]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYIKKAIWG PDPKEQQRRI RSVLRKNGRN IEKSLRELTV LQNKTQQLIK KSAKKNDVRT  60
   61 VRLYAKELYQ INKQYDRMYT SRAQLDSVRM KIDEAIRMNT LSNQMADSAG LMREVNSLVR 120
  121 LPQLRNTMIE LEKELMKSGI ISEMVDDTME SVGDVGEEMD EAVDEEVNKI VEQYTNEKFK 180
  181 NVDQVPTVEL AANEEEQEIP DEKVDEEADR MVNEMRERLR ALQN

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 8.2
Match: 1av1A
Description: Apolipoprotein A-I
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle