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View Structure Prediction Details

Protein: MRT4
Organism: Saccharomyces cerevisiae
Length: 236 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRT4.

Description E-value Query
Range		 Subject
Range
RLA0_RANSY - 60S acidic ribosomal protein P0 OS=Rana sylvatica GN=RPLP0 PE=2 SV=1
 5.0E-69 [14..236] [1..209]
RLA0_MOUSE - 60S acidic ribosomal protein P0 OS=Mus musculus GN=Rplp0 PE=1 SV=3
 7.0E-65 [14..236] [1..209]
RLA0_CHICK - 60S acidic ribosomal protein P0 OS=Gallus gallus GN=RPLP0 PE=2 SV=1
 8.0E-65 [14..236] [1..209]
gi|12654583 - gi|12654583|gb|AAH01127.1| Ribosomal protein, large, P0 [Homo sapiens]
 9.0E-65 [14..236] [1..209]
RLA0_ICTPU - 60S acidic ribosomal protein P0 OS=Ictalurus punctatus GN=rplp0 PE=2 SV=1
 1.0E-64 [14..236] [1..209]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
 4.0E-64 [14..236] [1..209]
RLA0_RAT - 60S acidic ribosomal protein P0 OS=Rattus norvegicus GN=Rplp0 PE=1 SV=2
 5.0E-64 [14..236] [1..209]

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Predicted Domain #1
Region A:
Residues: [1-236] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRSKRSKLV TLAQTDKKGR ENKERIFDEV REALDTYRYV WVLHLDDVRT PVLQEIRTSW  60
   61 AGSKLIMGKR KVLQKALGEK REEEYKENLY QLSKLCSGVT GLLFTDEDVN TVKEYFKSYV 120
  121 RSDYSRPNTK APLTFTIPEG IVYSRGGQIP AEEDVPMIHS LEPTMRNKFE IPTKIKAGKI 180
  181 TIDSPYLVCT EGEKLDVRQA LILKQFGIAA SEFKVKVSAY YDNDSSTVES TNINME

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 71.626727
Match: 1jj2G_
Description: Ribosomal protein L10
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle