YRC Public Data Repository - Protein Structure Prediction

Protein:	SFT1
Organism:	Saccharomyces cerevisiae
Length:	97 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SFT1.

Description	E-value	Query Range	Subject Range
BET1_RAT - BET1 homolog OS=Rattus norvegicus GN=Bet1 PE=1 SV=1	1.0E-21	[2..96]	[21..117]
BET1_MOUSE - BET1 homolog OS=Mus musculus GN=Bet1 PE=1 SV=1	3.0E-21	[2..96]	[21..117]
gi\|55628902 - gi\|55628902\|ref\|XP_519206.1\| PREDICTED: similar to BET1 homolog (Golgi vesicular membrane traffickin... gi\|60654967, gi\|... - gi\|60654967\|gb\|AAX32047.1\| BET1-like [synthetic construct], gi\|60654965\|gb\|AAX32046.1\| BET1-like [sy... BET1 - blocked early in transport 1 homolog (S. cerevisiae)	4.0E-21	[2..96]	[21..117]
BETL1_ARATH - Bet1-like protein At4g14600 OS=Arabidopsis thaliana GN=At4g14600 PE=2 SV=1	6.0E-21	[5..97]	[41..135]
gi\|151941539 - gi\|151941539\|gb\|EDN59902.1\| v-SNARE [Saccharomyces cerevisiae YJM789] SFT1_YEAST - Protein transport protein SFT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SFT1 PE=1... SFT1 - Intra-Golgi v-SNARE, required for transport of proteins between an early and a later Golgi compartme... gi\|190409816 - gi\|190409816\|gb\|EDV13081.1\| v-SNARE [Saccharomyces cerevisiae RM11-1a]	1.0E-18	[1..97]	[1..97]
gi\|3273913 - gi\|3273913\|gb\|AAC24884.1\| Sft1p [Kluyveromyces lactis]	3.0E-18	[1..97]	[1..97]
gi\|3703098 - gi\|3703098\|gb\|AAC64289.1\| synaptosome-associated protein 25.1 [Danio rerio]	9.0E-18	[7..73]	[58..124]
gi\|10801642 - gi\|10801642\|dbj\|BAB16738.1\| hypothetical protein [Macaca fascicularis]	2.0E-17	[7..73]	[77..143]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNSRYSQTE SNNDRKLEGL ANKLATFRNI NQEIGDRAVS DSSVINQMTD SLGSMFTDIK  60
   61 NSSSRLTRSL KAGNSIWRMV GLALLIFFIL YTLFKLF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.0
Match:	1sfcD_
Description:	Synaptosomal-assosiated protein SNAP-25
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits