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View Structure Prediction Details

Protein: ATP2
Organism: Saccharomyces cerevisiae
Length: 511 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP2.

Description E-value Query
Range
Subject
Range
ATPBM_NICPL - ATP synthase subunit beta, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPB PE=1 SV=1
0.0 [2..510] [47..558]
ATPB_AGAAF - ATP synthase subunit beta, chloroplastic OS=Agapanthus africanus GN=atpB PE=3 SV=1
0.0 [28..511] [5..495]
gi|3893824 - gi|3893824|gb|AAD03394.1| ATPase beta subunit [Nicotiana sylvestris]
0.0 [4..510] [43..551]
gi|5758870 - gi|5758870|gb|AAD50844.1| ATP synthase beta subunit [Cyanastrum cordifolium]
0.0 [28..510] [5..494]
ATPBM_ORYSJ - ATP synthase subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=ATPB PE=1 SV=2
ATPBM_ORYSA - ATP synthase subunit beta, mitochondrial precursor (EC 3.6.3.14) - Oryza sativa (Rice)
0.0 [2..510] [39..549]
gi|14718068 - gi|14718068|gb|AAK72775.1| ATP synthase beta subunit [Griselinia lucida]
0.0 [28..511] [2..492]
gi|6687625 - gi|6687625|emb|CAB65027.1| ATP synthase beta subunit [Griselinia littoralis]
0.0 [28..511] [5..495]
gi|6687120 - gi|6687120|emb|CAB64831.1| ATP synthase beta subunit [Cajophora acuminata]
0.0 [23..511] [5..495]
gi|6687379 - gi|6687379|emb|CAB64927.1| ATP synthase beta subunit [Decumaria barbara]
0.0 [36..511] [13..495]

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Predicted Domain #1
Region A:
Residues: [1-115]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLPRLYTAT SRAAFKAAKQ SAPLLSTSWK RCMASAAQST PITGKVTAVI GAIVDVHFEQ  60
   61 SELPAILNAL EIKTPQGKLV LEVAQHLGEN TVRTIAMDGT EGLVRGEKVL DTGGP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11000.0
Match: 1bmfD_
Description: F1 ATP synthase beta subunit, domain 3; F1 ATP synthase beta subunit, domain 1; Central domain of beta subunit of F1 ATP synthase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [116-370]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISVPVGRETL GRIINVIGEP IDERGPIKSK LRKPIHADPP SFAEQSTSAE ILETGIKVVD  60
   61 LLAPYARGGK IGLFGGAGVG KTVFIQELIN NIAKAHGGFS VFTGVGERTR EGNDLYREMK 120
  121 ETGVINLEGE SKVALVFGQM NEPPGARARV ALTGLTIAEY FRDEEGQDVL LFIDNIFRFT 180
  181 QAGSEVSALL GRIPSAVGYQ PTLATDMGLL QERITTTKKG SVTSVQAVYV PADDLTDPAP 240
  241 ATTFAHLDAT TVLSR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11000.0
Match: 1bmfD_
Description: F1 ATP synthase beta subunit, domain 3; F1 ATP synthase beta subunit, domain 1; Central domain of beta subunit of F1 ATP synthase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [371-511]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GISELGIYPA VDPLDSKSRL LDAAVVGQEH YDVASKVQET LQTYKSLQDI IAILGMDELS  60
   61 EQDKLTVERA RKIQRFLSQP FAVAEVFTGI PGKLVRLKDT VASFKAVLEG KYDNIPEHAF 120
  121 YMVGGIEDVV AKAEKLAAEA N

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11000.0
Match: 1bmfD_
Description: F1 ATP synthase beta subunit, domain 3; F1 ATP synthase beta subunit, domain 1; Central domain of beta subunit of F1 ATP synthase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle