YRC Public Data Repository - Protein Structure Prediction

Protein:	YJR111C
Organism:	Saccharomyces cerevisiae
Length:	283 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJR111C.

Description	E-value	Query Range	Subject Range
YJR111C - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th... YJ81_YEAST - Uncharacterized protein YJR111C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YJR111C ... gi\|151945176 - gi\|151945176\|gb\|EDN63427.1\| conserved protein [Saccharomyces cerevisiae YJM789] gi\|190409583 - gi\|190409583\|gb\|EDV12848.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]	0.0	[1..283]	[1..283]
SPBC17D11.03c - conserved fungal protein YBE3_SCHPO - Uncharacterized protein C17D11.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC17D...	5.0E-73	[99..283]	[54..213]
gi\|25291035 - pir\|\|H86871 hypothetical protein pcaC [imported] - Lactococcus lactis subsp. lactis (strain IL1403) gi\|12725019, gi\|... - gi\|15673958\|ref\|NP_268133.1\| gamma-carboxymuconolactone decarboxylase [Lactococcus lactis subsp. lac...	8.0E-4	[174..258]	[7..91]
gi\|15599682, gi\|... - gi\|9950724\|gb\|AAG07874.1\|AE004862_8 conserved hypothetical protein [Pseudomonas aeruginosa PAO1], gi... gi\|218893578, gi... - gi\|218893578\|ref\|YP_002442447.1\| putative carboxymuconolactone decarboxylase [Pseudomonas aeruginosa... gi\|11348195 - pir\|\|C83085 conserved hypothetical protein PA4486 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|107099929 - gi\|107099929\|ref\|ZP_01363847.1\| hypothetical protein PaerPA_01000950 [Pseudomonas aeruginosa PACS2] gi\|254238853, gi... - gi\|84316961\|ref\|ZP_00965418.1\| COG0599: Uncharacterized homolog of gamma-carboxymuconolactone decarb... gi\|126198080, gi... - gi\|84322981\|ref\|ZP_00971058.1\| COG0599: Uncharacterized homolog of gamma-carboxymuconolactone decarb...	0.002	[187..261]	[22..95]
gi\|7436588 - pir\|\|B69129 gamma-carboxymuconolactone decarboxylase - Methanobacterium thermoautotrophicum (strain ... gi\|15678262, gi\|... - gi\|2621282\|gb\|AAB84740.1\| gamma-carboxymuconolactone decarboxylase [Methanothermobacter thermautotro...	0.003	[172..261]	[5..93]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQILNAQRL IQLSQFHPKL KNIWYLVAAA TFSVCNEPQE IPKLYHYAML LSNDNAHMYR  60
   61 FTLASQTIDL LRSELPMRKT LINENYQQPT FFQKQLTAKF REVILKTGPL AGLPRAINGL 120
  121 TMLKETTPDI LVPHLDP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [138-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IDPWEAAMGN SSPLSETSMR RKHDKTIQER DHTIQNGLRH WNSIYNKVST RVVNNLNSSY  60
   61 PDLWYYTLVH VYGPLFAFDE ILSAQETSLV IIASLVPQDV NPQLRGHLKG ALNIGCDKET 120
  121 VEAVRGLAIL ISQWCGVSWK SGVVKL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.924	0.008	mitochondrion	a.74.1	Cyclin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits