YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: ECM27
Organism: Saccharomyces cerevisiae
Length: 725 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ECM27.

Description E-value Query
Range
Subject
Range
NCKX2_RAT - Sodium/potassium/calcium exchanger 2 OS=Rattus norvegicus GN=Slc24a2 PE=1 SV=1
442.0 [0..8] [556..120]
gi|109111428 - gi|109111428|ref|XP_001108751.1| PREDICTED: solute carrier family 24 (sodium/potassium/calcium excha...
436.0 [0..8] [582..119]
gi|114623874 - gi|114623874|ref|XP_528551.2| PREDICTED: solute carrier family 24 (sodium/potassium/calcium exchange...
434.0 [0..8] [582..119]
SLC24A2 - solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
433.0 [0..8] [582..119]
gi|73971038 - gi|73971038|ref|XP_852036.1| PREDICTED: similar to Sodium/potassium/calcium exchanger 2 precursor (N...
431.0 [0..8] [582..119]
gi|123858198, gi... - gi|27369563|ref|NP_766014.1| solute carrier family 24 (sodium/potassium/calcium exchanger), member 2...
431.0 [0..8] [556..120]

Back

Predicted Domain #1
Region A:
Residues: [1-130]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDWAINVAHP RLLYKDPKLS VTFIVPSLFH IIIAFVLLGI CASDFLCPNV AHISDPNSLR  60
   61 SNGSLVSKTA SHASHTGALM AVLLSWCNSS PDLFSNLMSW ATSTRETRST SVSLSIGEVL 120
  121 GACGIILCIV 

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 8.0
Match:
Description: No description for 1l9uD was found.

Predicted Domain #2
Region A:
Residues: [131-422]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGSIFIIMSR THIEISQIQK LSIMRDLLFS LAAMCVMSYV SLMNQVTVLN CLLMAFLYAF  60
   61 YLVVKLTFKL NHSAETPDET AADTSLREDS VSPFLDDSLM ASGLLPPIQP GFDISNSITH 120
  121 GIKPSLLSAM DFNSFLSMLE NSSLEEDDSR NEMAELNTLR SMTPGQHWSA SATVAGEATS 180
  181 AGRPFSEPTN AFTEYRDSER AINSSPAVFA PYRDNPDDEE SQEQVLLETT THGHFGAQEM 240
  241 RRFSKRSLGW IIKIFIPHLS NFSQKSISDA IFSIITVPFF IIFKLSCPQP PS

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 7.0
Match:
Description: No description for 1itwA was found.

Predicted Domain #3
Region A:
Residues: [423-596]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DILSYDPTLN RYSLTTLPII LLFIQSITAP FLLCSILSVL LTYHLGYLVY LFPLILAMAL  60
   61 ILLLTAFITK VNLHNKFTLS LDSSNILQEK LQKRKLLERL NTSIQIIFLA IGIINIIIWI 120
  121 SLLANSLIEM MEIYQKILGL SKAILGLTIF AWGNSVGDLI SNISMCRLYK TQTH

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 7.0
Match:
Description: No description for 1itwA was found.

Predicted Domain #4
Region A:
Residues: [597-725]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YQDRVRLATK FFMISCASCL GGVMLNSMGG IGFSGLVSML FIGAFNDNEW WFLRKVKLQE  60
   61 TSQLDNTLNY KFIVSCVFII LQIILLLLFF GGPNNIKRRL TKEMKLVGIS MCGLWALATL 120
  121 INILLELFS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.546 N/A N/A a.74.1 Cyclin-like
View Download 0.510 N/A N/A a.286.1 Description not found.
View Download 0.479 N/A N/A a.29.13 Description not found.
View Download 0.455 N/A N/A a.74.1 Cyclin-like
View Download 0.455 N/A N/A a.74.1 Cyclin-like
View Download 0.441 N/A N/A f.21.2 Fumarate reductase respiratory complex transmembrane subunits
View Download 0.382 N/A N/A a.3.1 Cytochrome c
View Download 0.368 N/A N/A a.74.1 Cyclin-like
View Download 0.364 N/A N/A a.36.1 Signal peptide-binding domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle