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View Structure Prediction Details

Protein: RSM26
Organism: Saccharomyces cerevisiae
Length: 266 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSM26.

Description E-value Query
Range
Subject
Range
SODM_GEOSE - Superoxide dismutase [Mn] OS=Geobacillus stearothermophilus GN=sodA PE=1 SV=2
1.0E-82 [8..266] [2..204]
SODM_DEIRA - Superoxide dismutase [Mn] OS=Deinococcus radiodurans GN=sodA PE=1 SV=3
SODM_DEIRA - Superoxide dismutase [Mn] OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LM...
2.0E-82 [8..264] [2..211]
gi|229330794, gi... - gi|229498423|ref|ZP_04392119.1| Superoxide dismutase [Geobacillus sp. Y412MC52], gi|229330794|gb|EEN...
gi|220706675, gi... - gi|221089386|ref|ZP_03558905.1| Superoxide dismutase [Geobacillus sp. Y412MC61], gi|220706675|gb|EED...
gi|56420992, gi|... - gi|56420992|ref|YP_148310.1| manganese superoxide dismutase [Geobacillus kaustophilus HTA426], gi|56...
gi|7578509 - gi|7578509|gb|AAF64074.1|AF147780_1 superoxide dismutase [Geobacillus thermoleovorans]
SODM_BACCA - Superoxide dismutase [Mn] OS=Bacillus caldotenax GN=sodA PE=3 SV=2
3.0E-82 [8..266] [2..204]
gi|447739 - gi|447739|prf||1915304A nylB upstream ORF
1.0E-81 [8..266] [2..205]
gi|3320377 - gi|3320377|gb|AAC26483.1| manganese superoxide dismutase [Vibrio alginolyticus]
1.0E-80 [9..263] [3..201]
gi|7798571 - gi|7798571|dbj|BAA95631.1| superoxide dismutase [Geobacillus thermoleovorans]
3.0E-80 [8..266] [2..204]
SODM_STACA - Superoxide dismutase [Mn/Fe] OS=Staphylococcus carnosus GN=sodA PE=3 SV=1
gi|222421268, gi... - gi|224476661|ref|YP_002634267.1| superoxide dismutase [Staphylococcus carnosus subsp. carnosus TM300...
6.0E-80 [8..265] [2..201]
SODM_BACHD - Superoxide dismutase [Mn] OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM ...
SODM_BACHD - Superoxide dismutase [Mn] OS=Bacillus halodurans GN=sodA PE=3 SV=1
1.0E-79 [8..264] [2..202]
gi|221323949 - gi|221323949|ref|ZP_03605243.1| superoxide dismutase [Bacillus subtilis subsp. subtilis str. SMY]
gi|221319672 - gi|221319672|ref|ZP_03600966.1| superoxide dismutase [Bacillus subtilis subsp. subtilis str. JH642]
gi|221314749 - gi|221314749|ref|ZP_03596554.1| superoxide dismutase [Bacillus subtilis subsp. subtilis str. NCIB 36...
SODM_BACSU - Superoxide dismutase [Mn] OS=Bacillus subtilis (strain 168) GN=sodA PE=1 SV=5
SODM_BACSU - Superoxide dismutase [Mn] OS=Bacillus subtilis GN=sodA PE=1 SV=5
3.0E-79 [8..264] [2..202]
gi|95281 - gi|95281|pir||A38461 superoxide dismutase (EC 1.15.1.1) (Fe/Mn) - Methylomonas sp
SODF_METJ - Superoxide dismutase [Mn/Fe] OS=Methylomonas sp. (strain J) GN=sodB PE=1 SV=1
1.0E-78 [8..265] [1..202]

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Predicted Domain #1
Region A:
Residues: [1-266]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVFKRGIHV VPKLPNSKAL LQNGVPNILS SSGFKTVWFD YQRYLCDKLT LATAGQSLES  60
   61 YYPFHILLKT AGNPLQSNIF NLASSIHNNH LFVENILPSA VEHGTNSNAV VKTEPSRLFL 120
  121 SKIKDSFNGS DWEVVKEEMI YRAENEVLGQ GWLFLVENNE KKLFILTSNN NGTPYYFPRN 180
  181 QSFDLNSAIS IDEFATLKQM KELIGKSTKL NGKVQDWTMP IICVNLWDHA YLHDYGVGNR 240
  241 SKYVKNVLDN LNWSVVNNRI FSGISK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 91.274545
Match: 1kkcA_
Description: Mn superoxide dismutase (MnSOD)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 5.72997742104809 bayes_pls_golite062009
structural molecule activity 5.36636990455827 bayes_pls_golite062009
superoxide dismutase activity 2.91460133010902 bayes_pls_golite062009
oxidoreductase activity, acting on superoxide radicals as acceptor 2.91460133010902 bayes_pls_golite062009
binding 1.15774244174596 bayes_pls_golite062009
protein binding 0.522753974969279 bayes_pls_golite062009
catalytic activity 0.390489225704392 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle