YRC Public Data Repository - Protein Structure Prediction

Protein:	FIP1
Organism:	Saccharomyces cerevisiae
Length:	327 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FIP1.

Description	E-value	Query Range	Subject Range
Fip1-PA - This gene is referred to in FlyBase by the symbol Dmel\Fip1 (CG1078, FBgn0037255). It is a protein_c...	212.0	[0..24]	[247..81]
SPAC22G7.10 - mRNA cleavage and polyadenylation specificity factor complex subunit, Fip1 homolog FIP1X_SCHPO - Pre-mRNA polyadenylation factor fip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2...	208.0	[0..65]	[249..11]
fipp-1 - status:Partially_confirmed UniProt:O16293 protein_id:AAB65355.1	205.0	[0..61]	[258..2]
gi\|32140872 - gi\|32140872\|gb\|AAP69563.1\| FIP1L1/PDGFRA fusion protein; rearranged-in-hypereosinophilia-platelet de...	185.0	[0..11]	[221..25]
gi\|26340408 - gi\|26340408\|dbj\|BAC33867.1\| unnamed protein product [Mus musculus]	178.0	[0..11]	[221..24]
gi\|114594748 - gi\|114594748\|ref\|XP_001146802.1\| PREDICTED: hypothetical protein isoform 10 [Pan troglodytes]	173.0	[0..11]	[316..25]
FIP1_RAT - Pre-mRNA 3'-end-processing factor FIP1 OS=Rattus norvegicus GN=Fip1l1 PE=1 SV=1 gi\|227330598 - gi\|227330598\|ref\|NP_001153046.1\| FIP1 like 1 isoform 3 [Mus musculus]	173.0	[0..11]	[221..24]

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Predicted Domain #1

Region A:
Residues: [1-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSEDEDDK FLYGSDSELA LPSSKRSRDD EADAGASSNP DIVKRQKFDS PVEETPATAR  60
   61 DDRSDEDIYS DSSDDDSDSD LEVIISLGPD PTRLDAKLLD SYSTAATSSS KDVISVATDV 120
  121 SNTITKTSDE RLITEGEANQ GVTATTVKAT ESDGNVPKAM TGSIDLDKEG IFDSVGITTI 180
  181 DPEVLKEKPW RQPGANLSDY FNYGFNEFTW MEYLHRQEKL QQDYNPRRIL MGLLSLQQQG 240
  241 KLNSANDTDS NLGNIIDN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [259-327]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNNVNNANMS NLNSNMGNSM SGTPNPPAPP MHPSFPPLPM FGSFPPFPMP GMMPPMNQQP  60
   61 NQNQNQNSK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits