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View Structure Prediction Details

Protein: CDC11
Organism: Saccharomyces cerevisiae
Length: 415 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDC11.

Description E-value Query
Range
Subject
Range
SEPT7_RAT - Septin-7 OS=Rattus norvegicus GN=Sept7 PE=1 SV=1
0.0 [1..415] [26..420]
SEPT7_MOUSE - Septin-7 OS=Mus musculus GN=Sept7 PE=1 SV=1
0.0 [1..415] [26..420]
SEPT4 - septin 4
0.0 [7..384] [129..478]
gi|220955920, gi... - gi|220955920|gb|ACL90503.1| pnut-PA [synthetic construct], gi|220946224|gb|ACL85655.1| pnut-PA [synt...
pnut-PA, pnut-PB - The gene peanut is referred to in FlyBase by the symbol Dmel\pnut (CG8705, FBgn0013726). It is a pro...
0.0 [1..387] [119..484]
gi|1791305 - gi|1791305|gb|AAB41233.1| septin B [Emericella nidulans]
0.0 [1..411] [9..400]

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Predicted Domain #1
Region A:
Residues: [1-175]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGIIDASSA LRKRKHLKRG ITFTVMIVGQ SGSGRSTFIN TLCGQQVVDT STTILLPTDT  60
   61 STEIDLQLRE ETVELEDDEG VKIQLNIIDT PGFGDSLDNS PSFEIISDYI RHQYDEILLE 120
  121 ESRVRRNPRF KDGRVHCCLY LINPTGHGLK EIDVEFIRQL GSLVNIIPVI SKSDS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.09691
Match: 1egaA_
Description: GTPase Era, N-terminal domain; GTPase Era C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [176-415]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTRDELKLNK KLIMEDIDRW NLPIYNFPFD EDEISDEDYE TNMYLRTLLP FAIIGSNEVY  60
   61 EMGGDVGTIR GRKYPWGILD VEDSSISDFV ILRNALLISH LHDLKNYTHE ILYERYRTEA 120
  121 LSGESVAAES IRPNLTKLNG SSSSSTTTRR NTNPFKQSNN INNDVLNPAS DMHGQSTGEN 180
  181 NETYMTREEQ IRLEEERLKA FEERVQQELL LKRQELLQRE KELREIEARL EKEAKIKQEE 240
  241 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.69897
Match: 1i84S_
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle