YRC Public Data Repository - Protein Structure Prediction

Protein:	HIT1
Organism:	Saccharomyces cerevisiae
Length:	164 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HIT1.

Description	E-value	Query Range	Subject Range
HIT1_YEAST - Protein HIT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HIT1 PE=1 SV=1 HIT1 - Protein of unknown function, required for growth at high temperature	2.0E-63	[1..164]	[1..164]
gi\|10241710, gi\|... - gi\|20149643\|ref\|NP_060423.2\| zinc finger, HIT type 6 [Homo sapiens], gi\|10241710\|emb\|CAC09440.1\| hyp...	3.0E-31	[8..125]	[220..336]
SPAC4F10.19c - zf-HIT protein Hit1 YEKJ_SCHPO - Uncharacterized zinc-finger protein C4F10.19c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)...	1.0E-18	[8..80]	[4..76]
ZNHI3_MOUSE - Zinc finger HIT domain-containing protein 3 OS=Mus musculus GN=Znhit3 PE=1 SV=1	6.0E-18	[5..84]	[8..84]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSSAVKCGI CRGVDGKYKC PKCGVRYCSL KCYKDAAKHV HKESEQPRAG TEANVEVVNN  60
   61 DKIINSSLAM NKTLKTKAFD DIYQNSAELQ ELLKYNTVKF HLAKVYRILS STVNDGSSGK 120
  121 MNSDLQKELA VNYLNTLRYG GIHYNEAIEE FCQILLDKLN AVKK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits