Protein: | URB2 |
Organism: | Saccharomyces cerevisiae |
Length: | 1174 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for URB2.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..1120] | [1..1120] |
|
1.0E-69 | [1014..1173] | [1142..1317] |
|
1.0E-69 | [1014..1173] | [1133..1308] |
Region A: Residues: [1-267] |
1 11 21 31 41 51 | | | | | | 1 MGDLTEELSI PDNAQDLSKL LRSTSTKPHQ IAEIVSKFDK LETYFPKKEI FVLDLLIDRL 60 61 NNGNLDDFKT SEHTWIIFTR LLDAINDPIS IKKLLKKLKT VPVMIRTFFL WPKDKLLTRS 120 121 VSFIKAFFAI NDYLIVNFSV EESFQLLEHA INGLSSCPTT DFALSYLQDA CNLTHVDNIT 180 181 TTDNKIATCY CKHMLLPSLR YFAQTKNSAS SNQSFIRLSH FMGKFLLQPR IDYMKLNKKF 240 241 VQENASEITD DMAYYYFATF VTFLSKD |
Detection Method: | |
Confidence: | 1.6 |
Match: | 1b3uA |
Description: | Constant regulatory domain of protein phosphatase 2a, pr65alpha |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [268-336] |
1 11 21 31 41 51 | | | | | | 1 NFAQLEVIFT ILGAKKPSLE CRFLNLLSES KKTVSQEFLE ALLLEMLAST DESGVLSLIP 60 61 IILKLDIEV |
Detection Method: | |
Confidence: | 1.6 |
Match: | 1b3uA |
Description: | Constant regulatory domain of protein phosphatase 2a, pr65alpha |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [337-509] |
1 11 21 31 41 51 | | | | | | 1 AIKHIFRLLE LIQLENLNDP LFSSHIWDLI IQSHANAREL SDFFAKINEY CSRKGPDSYF 60 61 LINHPAYVKS ITKQLFTLSS LQWKNLLQAL LDQVNHDSTN RVPLYLIRIC LEGLSEGASR 120 121 ATLDEVKPIL SQVFTLESFN NSLQWDLKYH IMEVYDDIVP AEELEKIDYV LSS |
Detection Method: | |
Confidence: | 1.6 |
Match: | 1b3uA |
Description: | Constant regulatory domain of protein phosphatase 2a, pr65alpha |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [510-748] |
1 11 21 31 41 51 | | | | | | 1 NIFDTTSADV EELFFYCFKL REYISFDLSD AKKKFMRHFE ILDEERKSNL SYSVVSKFAT 60 61 LVNNNFTREQ ISSLIDSLLL NSTNLSSLLK NDDIFEETNI TYALINKLAS SYHQTFALEA 120 121 LIQIPIQCIN KNVRVALINN LTCESFCLDS ATRECLLHLL SSPTFKSNIE TNFYELCEKT 180 181 IMSPEMAISE TGDEKKEIED KISIFEKVWT NHLSQAKEPV SEKFLESGYD IVKQSMSLS |
Detection Method: | |
Confidence: | 1.6 |
Match: | 1b3uA |
Description: | Constant regulatory domain of protein phosphatase 2a, pr65alpha |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [749-1003] |
1 11 21 31 41 51 | | | | | | 1 NGDSKLIIAG FTIAKFLKPD NKHRDIQGMA ISYAVKILEN YSENFESETI PLFRISMSTL 60 61 YKIITTGQGD ISKHKSRILD IFSKIMLRYH SKKVYHAPEE QEMFLVHSLL TENKLEYIFA 120 121 EYLNIEHTDK CDSALGFCLE ESLKQGPDAF NRLLWNSAKS FSTISQPCAE KFVRVFIIMS 180 181 KRIARDNNLG HHLFVIALLE AYTYCDIEKF GYKSYLLLFN AIKEFLVSKP WLFSQYCIEM 240 241 LLPFCLKTLA FIVNH |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [1004-1174] |
1 11 21 31 41 51 | | | | | | 1 ESTDEINEGF INIIEVIDHM LLVHRFKFSN RHHLFNSVLC QILEIIAIHD GTLCANSADA 60 61 VARLITNYCE PYNVSNAQNG QKNNLSSKIS LIKQSIRKNV LVVLTKYIQL SITTQFSLNI 120 121 KKSLQPGIHA IFDILSQNEL NQLNAFLDTP GKQYFKALYL QYKKVGKWRE D |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.825 | N/A | N/A | a.118.8 | TPR-like |
Region A: Residues: [767-977] |
1 11 21 31 41 51 | | | | | | 1 PDNKHRDIQG MAISYAVKIL ENYSENFESE TIPLFRISMS TLYKIITTGQ GDISKHKSRI 60 61 LDIFSKIMLR YHSKKVYHAP EEQEMFLVHS LLTENKLEYI FAEYLNIEHT DKCDSALGFC 120 121 LEESLKQGPD AFNRLLWNSA KSFSTISQPC AEKFVRVFII MSKRIARDNN LGHHLFVIAL 180 181 LEAYTYCDIE KFGYKSYLLL FNAIKEFLVS K |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [978-1174] |
1 11 21 31 41 51 | | | | | | 1 PWLFSQYCIE MLLPFCLKTL AFIVNHESTD EINEGFINII EVIDHMLLVH RFKFSNRHHL 60 61 FNSVLCQILE IIAIHDGTLC ANSADAVARL ITNYCEPYNV SNAQNGQKNN LSSKISLIKQ 120 121 SIRKNVLVVL TKYIQLSITT QFSLNIKKSL QPGIHAIFDI LSQNELNQLN AFLDTPGKQY 180 181 FKALYLQYKK VGKWRED |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.825 | N/A | N/A | a.118.8 | TPR-like |