YRC Public Data Repository - Protein Structure Prediction

Protein:	PET191
Organism:	Saccharomyces cerevisiae
Length:	108 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PET191.

Description	E-value	Query Range	Subject Range
gi\|50294564, gi\|... - gi\|50294564\|ref\|XP_449693.1\| hypothetical protein CAGL0M07986g [Candida glabrata CBS138], gi\|4952900... gi\|49529007 - gi\|49529007\|emb\|CAG62669.1\| unnamed protein product [Candida glabrata]	158.0	[0..1]	[108..1]
gi\|50309925, gi\|... - gi\|50309925\|ref\|XP_454976.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644111\|emb\|CAH0006... gi\|49644111 - gi\|49644111\|emb\|CAH00063.1\| KLLA0E22661p [Kluyveromyces lactis]	142.0	[0..1]	[108..1]
gi\|44983485 - gi\|44983485\|gb\|AAS52621.1\| AEL064Cp [Ashbya gossypii ATCC 10895] gi\|45190543, gi\|... - gi\|45190543\|ref\|NP_984797.1\| AEL064Cp [Ashbya gossypii ATCC 10895], gi\|44983485\|gb\|AAS52621.1\| AEL06...	137.0	[0..1]	[107..1]
gi\|49652385, gi\|... - gi\|50407569\|ref\|XP_456721.1\| hypothetical protein DEHA0A09207g [Debaryomyces hansenii CBS767], gi\|49... gi\|49652385 - gi\|49652385\|emb\|CAG84680.1\| DEHA2A08998p [Debaryomyces hansenii]	129.0	[0..1]	[103..1]
gi\|49647783 - gi\|49647783\|emb\|CAG82236.1\| YALI0C16731p [Yarrowia lipolytica] gi\|50548891, gi\|... - gi\|50548891\|ref\|XP_501916.1\| YALI0C16731p [Yarrowia lipolytica], gi\|49647783\|emb\|CAG82236.1\| YALI0C1...	128.0	[0..1]	[96..1]
gi\|42549579, gi\|... - gi\|46128695\|ref\|XP_388901.1\| hypothetical protein FG08725.1 [Gibberella zeae PH-1], gi\|42549579\|gb\|E...	101.0	[0..1]	[83..355]
CE21412 - status:Confirmed UniProt:Q9XW18 protein_id:CAA22316.1	99.0	[0..2]	[69..25]
gi\|119183622, gi... - gi\|90301609\|gb\|EAS31240.1\| hypothetical protein CIMG_06719 [Coccidioides immitis RS], gi\|119183622\|r...	95.0	[0..1]	[77..1]
gi\|169780660 - gi\|169780660\|ref\|XP_001824794.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83773534 - gi\|83773534\|dbj\|BAE63661.1\| unnamed protein product [Aspergillus oryzae] gi\|238505150, gi... - gi\|238505150\|ref\|XP_002383804.1\| cytochrome c oxidase assembly protein (Pet191), putative [Aspergill...	93.0	[0..1]	[74..1]
SPBC16A3.16 - mitochondrial inner membrane protein involved in cytochrome c oxidase assembly Pet191 PT191_SCHPO - Mitochondrial protein pet191 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1...	93.0	[0..1]	[68..1]

Back

Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVASCKDQKK AVAICLQRSP CVMIERHNPQ ECLDNPELNK DLPELCIAQM KAFLDCKRGI  60
   61 VDMTKRFTGN APLSTGKYDQ QYENLCKGKF DPREEMEKLK LLNSQQKD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.810	a.24.17	Group V grass pollen allergen
View	Download	0.605	a.24.26	Description not found.
View	Download	0.576	a.247.1	Description not found.
View	Download	0.575	a.130.1	Chorismate mutase II
View	Download	0.558	a.59.1	PAH2 domain
View	Download	0.550	a.24.3	Cytochromes
View	Download	0.528	a.24.9	alpha-catenin/vinculin
View	Download	0.523	a.130.1	Chorismate mutase II
View	Download	0.511	a.69.1	C-terminal domain of alpha and beta subunits of F1 ATP synthase
View	Download	0.485	a.24.17	Group V grass pollen allergen

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits