YRC Public Data Repository - Protein Structure Prediction

Protein:	ESS1
Organism:	Saccharomyces cerevisiae
Length:	190 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ESS1.

Description	E-value	Query Range	Subject Range
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	5.0E-46	[21..190]	[1..170]
gi\|447739 - gi\|447739\|prf\|\|1915304A nylB upstream ORF	3.0E-45	[21..190]	[1..170]
gi\|10120798 - gi\|10120798\|pdb\|1F8A\|B Chain B, Structural Basis For The Phosphoserine-Proline Recognition By Group ...	3.0E-42	[25..189]	[5..166]
gi\|7259613, gi\|1... - gi\|7259613\|gb\|AAF43897.1\|AF239760_1 prolyl isomerase Pin1 [Xenopus laevis], gi\|148227870\|ref\|NP_0010...	2.0E-40	[25..189]	[1..158]
gi\|6468202, gi\|6... - gi\|6468202\|dbj\|BAA87038.1\| PIN1 [Mus sp.], gi\|6468200\|dbj\|BAA87037.1\| PIN1 [Mus sp.] PIN1_MOUSE - Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 OS=Mus musculus GN=Pin1 PE=1 SV=1 gi\|55716013 - gb\|AAH86125.1\| Unknown (protein for MGC:98527) [Xenopus laevis]	7.0E-40	[25..189]	[1..164]
PIN1_SCHPO - Peptidyl-prolyl cis-trans isomerase pin1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=p... pin1 - peptidyl-prolyl cis-trans isomerase Pin1	5.0E-35	[28..188]	[3..173]
gi\|2739197 - gi\|2739197\|gb\|AAC49984.1\| peptidyl-prolyl cis/trans isomerase [Emericella nidulans]	7.0E-34	[27..189]	[2..175]
SSP1_NEUCR - (O60045) Peptidyl-prolyl cis-trans isomerase ssp1 (EC 5.2.1.8) (PPIase ssp1)	8.0E-33	[28..189]	[6..181]

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Predicted Domain #1

Region A:
Residues: [1-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIVVLIPTH NRLRHHNDAP MPSDVASRTG LPTPWTVRYS KSKKREYFFN PETKHSQWEE  60
   61 PEGTNKDQLH KHLRDHPVRV RCLHILIKHK DSRRPASHRS ENITISKQDA TDELKTLITR 120
  121 LDDDSKTNSF EALAKERSDC SSYKRGGDLG WFGRGEMQPS FEDAAFQLKV GEVSDIVESG 180
  181 SGVHVIKRVG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	359.9897
Match:	1f8aB_
Description:	Mitotic rotamase PIN1; Mitotic rotamase PIN1, domain 2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits