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View Structure Prediction Details

Protein: AVT1
Organism: Saccharomyces cerevisiae
Length: 602 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AVT1.

Description E-value Query
Range
Subject
Range
AVT1 - Vacuolar transporter, imports large neutral amino acids into the vacuole; member of a family of seve...
gi|190409487 - gi|190409487|gb|EDV12752.1| gln [Saccharomyces cerevisiae RM11-1a]
AVT1_YEAST - Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 P...
gi|151945076 - gi|151945076|gb|EDN63327.1| neutral amino acid transporter [Saccharomyces cerevisiae YJM789]
0.0 [1..602] [1..602]
gi|1778491 - gi|1778491|gb|AAB40774.1| phenylalanine-specific permease [Escherichia coli]
3.0E-86 [177..595] [4..440]
gi|238862018, gi... - gi|238899853|ref|YP_002925649.1| phenylalanine transporter [Escherichia coli BW2952], gi|238862018|g...
gi|169887990, gi... - gi|170080256|ref|YP_001729576.1| phenylalanine transporter [Escherichia coli str. K-12 substr. DH10B...
EG10708 - phenylalanine transporter / Phenylalanine-specific permease
EG10708 - phenylalanine transporter / Phenylalanine-specific permease
gi|1651239, gi|8... - gi|89107441|ref|AP_001221.1| phenylalanine transporter [Escherichia coli str. K-12 substr. W3110], g...
PHEP_ECOLI - Phenylalanine-specific permease - Escherichia coli
8.0E-85 [187..595] [2..428]
gi|13360072, gi|... - gi|15829868|ref|NP_308641.1| phenylalanine transporter [Escherichia coli O157:H7 str. Sakai], gi|133...
gi|209777706, gi... - pir||A85556 phenylalanine-specific transport system [imported] - Escherichia coli (strain O157:H7, s...
gi|208726466, gi... - gi|208806665|ref|ZP_03249002.1| phenylalanine-specific permease [Escherichia coli O157:H7 str. EC420...
gi|254791741, gi... - gi|254791741|ref|YP_003076578.1| phenylalanine transporter [Escherichia coli O157:H7 str. TW14359], ...
gi|217326443, gi... - gi|217326443|ref|ZP_03442527.1| phenylalanine-specific permease [Escherichia coli O157:H7 str. TW145...
gi|12513461, gi|... - gi|15800289|ref|NP_286301.1| phenylalanine transporter [Escherichia coli O157:H7 EDL933], gi|1251346...
gi|13360072, gi|... - gi|15829868|ref|NP_308641.1| phenylalanine-specific transport system [Escherichia coli O157:H7], gi|...
gi|168754668, gi... - gi|189357991|gb|EDU76410.1| phenylalanine-specific permease [Escherichia coli O157:H7 str. EC4401], ...
gi|189369115, gi... - gi|189369115|gb|EDU87531.1| phenylalanine-specific permease [Escherichia coli O157:H7 str. EC4501], ...
gi|189360870, gi... - gi|189360870|gb|EDU79289.1| phenylalanine-specific permease [Escherichia coli O157:H7 str. EC4486], ...
gi|195936121 - gi|195936121|ref|ZP_03081503.1| phenylalanine transporter [Escherichia coli O157:H7 str. EC4024]
1.0E-84 [187..595] [2..428]
gi|16763945, gi|... - gi|16763945|ref|NP_459560.1| phenylalanine transporter [Salmonella typhimurium LT2], gi|16419077|gb|...
gi|62126808, gi|... - gi|62179175|ref|YP_215592.1| phenylalanine transporter [Salmonella enterica subsp. enterica serovar ...
gi|200389381, gi... - gi|200389381|ref|ZP_03215992.1| phenylalanine-specific permease [Salmonella enterica subsp. enterica...
gi|206707844, gi... - gi|207856041|ref|YP_002242692.1| phenylalanine transporter [Salmonella enterica subsp. enterica sero...
gi|197265644, gi... - gi|197265644|ref|ZP_03165718.1| phenylalanine-specific permease [Salmonella enterica subsp. enterica...
gi|198243499, gi... - gi|198243499|ref|YP_002214569.1| phenylalanine-specific permease [Salmonella enterica subsp. enteric...
gi|194408109, gi... - gi|194449805|ref|YP_002044599.1| phenylalanine transporter [Salmonella enterica subsp. enterica sero...
gi|194457241, gi... - gi|194470877|ref|ZP_03076861.1| phenylalanine-specific permease [Salmonella enterica subsp. enterica...
gi|205334002, gi... - gi|205334002|gb|EDZ20766.1| phenylalanine-specific permease [Salmonella enterica subsp. enterica ser...
gi|205340438, gi... - gi|205340438|gb|EDZ27202.1| phenylalanine-specific permease [Salmonella enterica subsp. enterica ser...
gi|205324134, gi... - gi|205324134|gb|EDZ11973.1| phenylalanine-specific permease [Salmonella enterica subsp. enterica ser...
lcl|NC_016856.1_... - [gene=pheP] [protein=phenylalanine transporter] [protein_id=YP_005236271.1] [location=624893..626287...
gi|205330921, gi... - gi|205330921|gb|EDZ17685.1| phenylalanine-specific permease [Salmonella enterica subsp. enterica ser...
gi|161364587, gi... - gi|161615223|ref|YP_001589188.1| phenylalanine transporter [Salmonella enterica subsp. enterica sero...
3.0E-83 [194..595] [13..432]
gi|16759535 - gi|16759535|ref|NP_455152.1| phenylalanine transporter [Salmonella enterica subsp. enterica serovar ...
gi|213427910 - gi|213427910|ref|ZP_03360660.1| phenylalanine transporter [Salmonella enterica subsp. enterica serov...
gi|197363210, gi... - gi|197363210|ref|YP_002142847.1| phenylalanine transporter [Salmonella enterica subsp. enterica sero...
gi|25296493, gi|... - gi|25296493|pir||AI0572 phenylalanine-specific permease [imported] - Salmonella enterica subsp. ente...
gi|29138323, gi|... - gi|29142692|ref|NP_806034.1| phenylalanine transporter [Salmonella enterica subsp. enterica serovar ...
gi|213999523 - gi|213999523|ref|ZP_03410258.1| phenylalanine transporter [Salmonella enterica subsp. enterica serov...
gi|213646267 - gi|213646267|ref|ZP_03376320.1| phenylalanine transporter [Salmonella enterica subsp. enterica serov...
gi|213612833 - gi|213612833|ref|ZP_03370659.1| phenylalanine transporter [Salmonella enterica subsp. enterica serov...
gi|213585612 - gi|213585612|ref|ZP_03367438.1| phenylalanine transporter [Salmonella enterica subsp. enterica serov...
gi|56414288, gi|... - gi|56414288|ref|YP_151363.1| phenylalanine transporter [Salmonella enterica subsp. enterica serovar ...
3.0E-83 [194..595] [13..432]
gi|221315320 - gi|221315320|ref|ZP_03597125.1| hypothetical protein BsubsN3_16527 [Bacillus subtilis subsp. subtili...
YTNA_BACSU - Uncharacterized amino acid permease YtnA OS=Bacillus subtilis GN=ytnA PE=3 SV=1
gi|221324519 - gi|221324519|ref|ZP_03605813.1| hypothetical protein BsubsS_16597 [Bacillus subtilis subsp. subtilis...
gi|221320237 - gi|221320237|ref|ZP_03601531.1| hypothetical protein BsubsJ_16448 [Bacillus subtilis subsp. subtilis...
YTNA_BACSU - Uncharacterized amino acid permease YtnA OS=Bacillus subtilis (strain 168) GN=ytnA PE=3 SV=1
7.0E-83 [199..598] [3..423]
gi|149366304, gi... - gi|149366304|ref|ZP_01888339.1| aromatic amino acid transport protein [Yersinia pestis CA88-4125], g...
Q66BZ5|Q66BZ5_YERPS - APC family aromatic amino acid transport protein - Yersinia pseudotuberculosis
gi|145210361, gi... - gi|145598665|ref|YP_001162741.1| aromatic amino acid transport protein [Yersinia pestis Pestoides F]...
gi|162418380, gi... - gi|77633681|ref|ZP_00795802.1| COG1113: Gamma-aminobutyrate permease and related permeases [Yersinia...
gi|77628822, gi|... - gi|77628822|ref|ZP_00791408.1| COG1113: Gamma-aminobutyrate permease and related permeases [Yersinia...
gi|165927974, gi... - gi|165927974|ref|ZP_02223806.1| aromatic amino acid transport protein AroP [Yersinia pestis biovar O...
gi|229703597, gi... - gi|229894199|ref|ZP_04509382.1| aromatic amino acid transport protein [Yersinia pestis Pestoides A],...
gi|167427099, gi... - gi|167427099|ref|ZP_02318852.1| aromatic amino acid transport protein AroP [Yersinia pestis biovar M...
gi|229897118, gi... - gi|229897118|ref|ZP_04512274.1| aromatic amino acid transport protein [Yersinia pestis biovar Orient...
gi|167402185, gi... - gi|167402185|ref|ZP_02307660.1| aromatic amino acid transport protein AroP [Yersinia pestis biovar A...
gi|229897845, gi... - gi|229897845|ref|ZP_04512996.1| aromatic amino acid transport protein [Yersinia pestis biovar Orient...
gi|165938795, gi... - gi|89102246|ref|ZP_01174895.1| COG1113: Gamma-aminobutyrate permease and related permeases [Yersinia...
gi|186895055, gi... - gi|186895055|ref|YP_001872167.1| amino acid permease-associated region [Yersinia pseudotuberculosis ...
gi|108807113, gi... - gi|108807113|ref|YP_651029.1| aromatic amino acid transport protein [Yersinia pestis Antiqua], gi|10...
gi|170024702, gi... - gi|170024702|ref|YP_001721207.1| amino acid permease-associated region [Yersinia pseudotuberculosis ...
gi|108812540, gi... - gi|229902924|ref|ZP_04518041.1| aromatic amino acid transport protein [Yersinia pestis Nepal516], gi...
gi|51589239, gi|... - gi|51595957|ref|YP_070148.1| amino acid APC transporter [Yersinia pseudotuberculosis IP 32953], gi|5...
gi|25296476 - pir||AF0212 aromatic amino acid transport protein YPO1743 [imported] - Yersinia pestis (strain CO92)
gi|16122000, gi|... - gi|218928868|ref|YP_002346743.1| aromatic amino acid transport protein [Yersinia pestis CO92], gi|16...
4.0E-82 [202..595] [8..419]
gi|11347452 - pir||B83270 aromatic amino acid transport protein AroP1 PA3000 [imported] - Pseudomonas aeruginosa (...
gi|15598196, gi|... - gi|9949101|gb|AAG06388.1|AE004725_1 aromatic amino acid transport protein AroP1 [Pseudomonas aerugin...
1.0E-81 [195..602] [2..436]

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Predicted Domain #1
Region A:
Residues: [1-179]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEQEPLSPN GRKRSEVHYI SIPLNRGSAF SPDDSVSQFQ SDGFMTRRQS ILDHPVGSFK  60
   61 GVNSLSRFAT SLRRANSFRN IELNADNERS FFKESNDETY DPDTLAPALD GRRLSVTLNN 120
  121 AGRPRITNLA NNDRVSTASM AIHDDDYGSI QNSTIGDSGS ILRPTASLTE MMSGGAGRR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [180-602]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FTNNDMDSIV VKRVEGVDGK VVTLLAGQST APQTIFNSIN VLIGIGLLAL PLGLKYAGWV  60
   61 IGLTMLAIFA LATFCTAELL SRCLDTDPTL ISYADLGYAA FGTKGRALIS ALFTLDLLGS 120
  121 GVSLVILFGD SLNALFPQYS TTFFKIVSFF IVTPPVFIPL SVLSNISLLG ILSTTGTVLV 180
  181 ICCCGLYKSS SPGSLVNPME TSMWPIDLKH LCLSIGLLSA CWGGHAVFPN LKTDMRHPDK 240
  241 FKDCLKTTYK ITSVTDIGTA VIGFLMFGNL VKDEITKNVL LTEGYPKFVY GLISALMTII 300
  301 PIAKTPLNAR PIVSVLDVLM NVQHIDEAAS AIKRRAAKGL QVFNRIFINV VFVLIAINFP 360
  361 EFDKIIAFLG AGLCFTICLI LPCWFYLRLC KTTIKPWERV ACHVTICISV VLSTLGVGAA 420
  421 IIS

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 126.130768
Match: PF01490
Description: Transmembrane amino acid transporter protein

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle