YRC Public Data Repository - Protein Structure Prediction

Protein:	PEX2
Organism:	Saccharomyces cerevisiae
Length:	271 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PEX2.

Description	E-value	Query Range	Subject Range
gi\|151944926 - gi\|151944926\|gb\|EDN63181.1\| peroxin [Saccharomyces cerevisiae YJM789] PEX2_YEAST - Peroxisomal biogenesis factor 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PEX2 PE=... PEX2 - RING-finger peroxin, peroxisomal membrane protein with a C-terminal zinc-binding RING domain, forms ...	3.0E-94	[1..271]	[1..271]
gi\|227548 - gi\|227548\|prf\|\|1706355A peroxisome assembly factor 1 gi\|57645 - gi\|57645\|emb\|CAA41054.1\| peroxisome assembly factor-1 [Rattus rattus] PEX2_RAT - Peroxisome biogenesis factor 2 OS=Rattus norvegicus GN=Pex2 PE=2 SV=1	1.0E-78	[3..261]	[16..285]
gi\|254028172, gi... - gi\|74214570\|dbj\|BAE31130.1\| unnamed protein product [Mus musculus], gi\|74185307\|dbj\|BAE30130.1\| unna...	5.0E-77	[3..261]	[16..285]
PEX2 - peroxisomal biogenesis factor 2 gi\|208968651 - gi\|208968651\|dbj\|BAG74164.1\| peroxisomal membrane protein 3, 35kDa [synthetic construct]	1.0E-75	[3..261]	[16..285]
PEX2_CRIGR - Peroxisome biogenesis factor 2 OS=Cricetulus griseus GN=PEX2 PE=1 SV=1	4.0E-74	[3..260]	[15..283]
PEX2_ARATH - Peroxisome biogenesis protein 2 OS=Arabidopsis thaliana GN=PEX2 PE=1 SV=1	8.0E-59	[1..259]	[37..317]
gi\|15384797 - gi\|15384797\|emb\|CAC59701.1\| peroxin-2 [Trypanosoma brucei]	9.0E-57	[3..261]	[40..322]
gi\|220944468, gi... - gi\|220954342\|gb\|ACL89714.1\| CG7081-PA [synthetic construct], gi\|220944468\|gb\|ACL84777.1\| CG7081-PA [... CG7081-PA - This gene is referred to in FlyBase by the symbol Dmel\CG7081 (CG7081, FBgn0035876). It is a protein...	3.0E-56	[3..262]	[9..272]

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Predicted Domain #1

Region A:
Residues: [1-165]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRVAQLDSI ALDKELYGQF WSEFNAAFNT SEHKEEWELA LNTVVFMCAT RFLPHYGSSC  60
   61 TYGSALSGVV FQCRKRTLYV VTVLAGYVWK KITHIIFNGP HCGNQMMWLK LYKWVNLLYH 120
  121 GCDVTNFLRF LAAEGPNARA FLSPLYRAFN VHSTRLIRDG SAIAS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [166-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EFYSNSVFAG LEYQNRQLLW NALLELFSNT LLTKRGLLTF VKKPPRSRST TTYKTVCPRC  60
   61 GGFPTNPYQI ACCRANYCYV CVVKALEWSM CDACGSSGRL TASPVY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	2.522879
Match:	1chc__
Description:	Immediate early protein, IEEHV
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits