YRC Public Data Repository - Protein Structure Prediction

Protein:	RPS14B
Organism:	Saccharomyces cerevisiae
Length:	138 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS14B.

Description	E-value	Query Range	Subject Range
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-42	[14..131]	[6..123]
RS14_RAT - 40S ribosomal protein S14 OS=Rattus norvegicus GN=Rps14 PE=2 SV=3	2.0E-40	[7..127]	[20..140]
ENSPTRT00000032220 - null gi\|47221346 - gi\|47221346\|emb\|CAF97264.1\| unnamed protein product [Tetraodon nigroviridis] RS14_CRIGR - 40S ribosomal protein S14 OS=Cricetulus griseus GN=RPS14 PE=2 SV=3 gi\|149726729 - gi\|149726729\|ref\|XP_001503764.1\| PREDICTED: similar to ribosomal protein S14 [Equus caballus] gi\|53136692, gi\|... - gi\|71895291\|ref\|NP_001025790.1\| ribosomal protein S14 [Gallus gallus], gi\|53136692\|emb\|CAG32675.1\| h... gi\|149567989 - gi\|149567989\|ref\|XP_001513237.1\| PREDICTED: similar to 40S ribosomal protein S14 [Ornithorhynchus an... gi\|149064353, gi... - gi\|37231722\|gb\|AAH58472.1\| Rps14 protein [Rattus norvegicus], gi\|149064357\|gb\|EDM14560.1\| rCG46686, ... gi\|77748236, gi\|... - gi\|77748236\|gb\|AAI06305.1\| Rps14-prov protein [Xenopus laevis], gi\|27735476\|gb\|AAH41512.1\| Rps14-pro... gi\|57085269, gi\|... - gi\|73953671\|ref\|XP_867612.1\| PREDICTED: similar to ribosomal protein S14 isoform 4 [Canis familiaris... gi\|123980122, gi... - gi\|61358971\|gb\|AAX41648.1\| ribosomal protein S14 [synthetic construct], gi\|208967326\|dbj\|BAG73677.1\|... gi\|123204259 - gi\|123204259\|gb\|ABM73530.1\| 40S ribosomal protein S14 [Dicentrarchus labrax] gi\|126290594 - gi\|126290594\|ref\|XP_001369354.1\| PREDICTED: similar to 40S ribosomal protein S14 [Monodelphis domest... gi\|62859657, gi\|... - gi\|62859657\|ref\|NP_001016722.1\| hypothetical protein LOC549476 [Xenopus (Silurana) tropicalis], gi\|1... CCDS4307.1_1 - null gi\|119895729, gi... - gi\|76623515\|ref\|XP_586495.2\| PREDICTED: similar to ribosomal protein S14 [Bos taurus], gi\|119895729\|... gi\|60417184 - gi\|60417184\|emb\|CAH57703.1\| 40S ribosomal protein S14 [Platichthys flesus] RPS14 - ribosomal protein S14 RS14_MOUSE - 40S ribosomal protein S14 OS=Mus musculus GN=Rps14 PE=1 SV=3 gi\|542149549\|ref... - PREDICTED: 40S ribosomal protein S14 isoform X2 [Zonotrichia albicollis], PREDICTED: 40S ribosomal p... ENSOCUP000000206... - pep:novel chromosome:oryCun2:1:60521557:60522084:-1 gene:ENSOCUG00000026323 transcript:ENSOCUT000000... gi\|224067701, gi... - gi\|224067701\|ref\|XP_002198745.1\| PREDICTED: similar to 40S ribosomal protein S14 [Taeniopygia guttat... ENSMMUG000000028... - null, null, null, null	2.0E-40	[7..127]	[20..140]
gi\|15294039 - gi\|15294039\|gb\|AAK95196.1\|AF402822_1 40S ribosomal protein S14 [Ictalurus punctatus]	2.0E-40	[7..127]	[20..140]
RS14_CHLRE - 40S ribosomal protein S14 OS=Chlamydomonas reinhardtii GN=RPS14 PE=3 SV=1	2.0E-39	[8..127]	[23..142]
RS11_HALMA - 30S ribosomal protein S11P OS=Haloarcula marismortui GN=rps11p PE=1 SV=3 RS11_HALMA - 30S ribosomal protein S11 OS=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B...	3.0E-39	[9..131]	[3..125]
gi\|15213816 - gi\|15213816\|gb\|AAK92183.1\|AF400211_1 ribosomal protein S14 [Spodoptera frugiperda]	3.0E-39	[1..127]	[1..140]
RS11_PSEAE - 30S ribosomal protein S11 OS=Pseudomonas aeruginosa GN=rpsK PE=3 SV=1 RS11_PSEAE - 30S ribosomal protein S11 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 1... RS11_PSEAB - 30S ribosomal protein S11 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rpsK PE=3 SV=1 gi\|254237104, gi... - gi\|254237104\|ref\|ZP_04930427.1\| 30S ribosomal protein S11 [Pseudomonas aeruginosa C3719], gi\|1945480... RS11_AZOVD - 30S ribosomal protein S11 OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=rpsK PE=3 SV=1 gi\|254242911, gi... - gi\|254242911\|ref\|ZP_04936233.1\| 30S ribosomal protein S11 [Pseudomonas aeruginosa 2192], gi\|19455389... RS11_PSEA8 - 30S ribosomal protein S11 OS=Pseudomonas aeruginosa (strain LESB58) GN=rpsK PE=3 SV=1 RS11_PSEA7 - 30S ribosomal protein S11 OS=Pseudomonas aeruginosa (strain PA7) GN=rpsK PE=3 SV=1	3.0E-39	[2..134]	[5..128]
RS14A_DROYA - 40S ribosomal protein S14a OS=Drosophila yakuba GN=RpS14a PE=2 SV=1 gi\|194763635, gi... - gi\|194763635\|ref\|XP_001963938.1\| GF21290 [Drosophila ananassae], gi\|190618863\|gb\|EDV34387.1\| GF21290... gi\|220952120 - gi\|220952120\|gb\|ACL88603.1\| RpS14a-PA [synthetic construct] FBpp0311458, RpS... - The gene Ribosomal protein S14a is referred to in FlyBase by the symbol Dmel\RpS14a (CG1524, FBgn000...	3.0E-39	[7..127]	[20..140]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANDLVQARD NSQVFGVARI YASFNDTFVH VTDLSGKETI ARVTGGMKVK ADRDESSPYA  60
   61 AMLAAQDVAA KCKEVGITAV HVKIRATGGT RTKTPGPGGQ AALRALARSG LRIGRIEDVT 120
  121 PVPSDSTRKK GGRRGRRL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	584.38764
Match:	1k5xK_
Description:	No description for 1k5xK_ was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits