| Protein: | PBS2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 668 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PBS2.
| Description | E-value | Query Range |
Subject Range |
|
|
634.0 | [0..1] | [668..1] |
|
|
475.0 | [0..84] | [652..2] |
|
|
474.0 | [0..89] | [652..7] |
|
|
474.0 | [0..89] | [652..7] |
|
|
473.0 | [0..89] | [652..7] |
|
|
472.0 | [0..89] | [652..7] |
|
Region A: Residues: [1-138] |
1 11 21 31 41 51
| | | | | |
1 MEDKFANLSL HEKTGKSSIQ LNEQTGSDNG SAVKRTSSTS SHYNNINADL HARVKAFQEQ 60
61 RALKRSASVG SNQSEQDKGS SQSPKHIQQI VNKPLPPLPV AGSSKVSQRM SSQVVQASSK 120
121 STLKNVLDNQ ETQNITDV
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.611 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.611 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.554 | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.553 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.553 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.466 | d.110.4 | SNARE-like |
| View | Download | 0.466 | d.110.4 | SNARE-like |
| View | Download | 0.443 | d.110.4 | SNARE-like |
| View | Download | 0.443 | d.110.4 | SNARE-like |
| View | Download | 0.440 | a.72.1 | Functional domain of the splicing factor Prp18 |
|
Region A: Residues: [139-327] |
1 11 21 31 41 51
| | | | | |
1 NINIDTTKIT ATTIGVNTGL PATDITPSVS NTASATHKAQ LLNPNRRAPR RPLSTQHPTR 60
61 PNVAPHKAPA IINTPKQSLS ARRAVKLPPG GMSLKMPTKT AQQPQQFAPS PSNKKHIETL 120
121 SNSKVVEGKR SNPGSLINGV QSTSTSSSTE GPHDTVGTTP RTGNSNNSSN SGSSGGGGLF 180
181 ANFSKYVDI
|
| Detection Method: | |
| Confidence: | 7.25 |
| Match: | |
| Description: | No description for 1ldvA was found. |
|
Region A: Residues: [328-437] |
1 11 21 31 41 51
| | | | | |
1 KSGSLNFAGK LSLSSKGIDF SNGSSSRITL DELEFLDELG HGNYGNVSKV LHKPTNVIMA 60
61 TKEVRLELDE AKFRQILMEL EVLHKCNSPY IVDFYGAFFI EGAVYMCMEY
|
| Detection Method: | |
| Confidence: | 357.0 |
| Match: | 1f3mC |
| Description: | pak1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [438-668] |
1 11 21 31 41 51
| | | | | |
1 MDGGSLDKIY DESSEIGGID EPQLAFIANA VIHGLKELKE QHNIIHRDVK PTNILCSANQ 60
61 GTVKLCDFGV SGNLVASLAK TNIGCQSYMA PERIKSLNPD RATYTVQSDI WSLGLSILEM 120
121 ALGRYPYPPE TYDNIFSQLS AIVDGPPPRL PSDKFSSDAQ DFVSLCLQKI PERRPTYAAL 180
181 TEHPWLVKYR NQDVHMSEYI TERLERRNKI LRERGENGLS KNVPALHMGG L
|
| Detection Method: | |
| Confidence: | 357.0 |
| Match: | 1f3mC |
| Description: | pak1 |
| Matching Structure (courtesy of the PDB): |
|
