YRC Public Data Repository - Protein Structure Prediction

Protein:	ASF1
Organism:	Saccharomyces cerevisiae
Length:	279 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ASF1.

Description	E-value	Query Range	Subject Range
gi\|114675723 - gi\|114675723\|ref\|XP_001171489.1\| PREDICTED: anti-silencing function 1B [Pan troglodytes] gi\|254071443, gi... - gi\|254071443\|gb\|ACT64481.1\| ASF1 anti-silencing function 1 homolog B (S. cerevisiae) protein [synthe... ASF1B - ASF1 anti-silencing function 1 homolog B (S. cerevisiae)	8.0E-71	[1..169]	[1..170]
gi\|55249890 - gb\|AAH86067.1\| Unknown (protein for MGC:98427) [Xenopus laevis] ASF1B_MOUSE - Histone chaperone ASF1B OS=Mus musculus GN=Asf1b PE=1 SV=1	2.0E-69	[1..170]	[1..171]
ASF1B_ARATH - Histone chaperone ASF1B OS=Arabidopsis thaliana GN=ASF1B PE=1 SV=1	4.0E-61	[1..214]	[1..218]
asf1-PB, asf1-PA - The gene anti-silencing factor 1 is referred to in FlyBase by the symbol Dmel\asf1 (CG9383, FBgn0029... gi\|220954228, gi... - gi\|220954228\|gb\|ACL89657.1\| asf1-PA [synthetic construct], gi\|220944436\|gb\|ACL84761.1\| asf1-PA [synt...	2.0E-59	[1..154]	[1..154]
ASF1 - Nucleosome assembly factor, involved in chromatin assembly and disassembly, anti-silencing protein t... gi\|207344081 - gi\|207344081\|gb\|EDZ71337.1\| YJL115Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190409390 - gi\|190409390\|gb\|EDV12655.1\| anti-silencing protein 1 [Saccharomyces cerevisiae RM11-1a] ASF1_YEAST - Histone chaperone ASF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ASF1 PE=1 SV=1	3.0E-57	[1..279]	[1..279]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIVSLLGIK VLNNPAKFTD PYEFEITFEC LESLKHDLEW KLTYVGSSRS LDHDQELDSI  60
   61 LVGPVPVGVN KFVFSADPPS AEL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [84-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPASELVSVT VILLSCSYDG REFVRVGYYV NNEYDEEELR ENPPAKVQVD HIVRNILAEK  60
   61 PRVTRFNIVW DNENEGDLYP PEQPGVDDEE EEDDEEED

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	7.45
Match:	1l8mA
Description:	No description for 1l8mA was found.

Predicted Domain #3

Region A:
Residues: [182-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDEDDEDDED DDQEDGEGEA EEAAEEEEEE EEKTEDNETN LEEEEEDIEN SDGDEEEGEE  60
   61 EVGSVDKNED GNDKKRRKIE GGSTDIESTP KDAARSTN

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	7.45
Match:	1l8mA
Description:	No description for 1l8mA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits