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View Structure Prediction Details

Protein: GWT1
Organism: Saccharomyces cerevisiae
Length: 498 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GWT1.

Description E-value Query
Range
Subject
Range
gi|929862 - gi|929862|emb|CAA58476.1| J0916 [Saccharomyces cerevisiae]
0.0 [1..474] [1..474]
gi|18071387 - gi|18071387|gb|AAL58246.1|AC084762_20 unknown protein [Oryza sativa]
0.0 [13..497] [10..514]
GWT1_SCHPO - GPI-anchored wall transfer protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gwt1 ...
gwt1 - pig-W
0.0 [13..498] [4..459]
FBpp0306201, CG1... - This gene is referred to in FlyBase by the symbol Dmel\CG18173 (CG18173, FBgn0035265). It is a prote...
gi|220948346, gi... - gi|220957570|gb|ACL91328.1| CG18173-PA [synthetic construct], gi|220948346|gb|ACL86716.1| CG18173-PA...
4.0E-95 [24..496] [51..503]
gi|19173608, gi|... - gi|19173608|ref|NP_597411.1| similarity to HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YJJ1_yeast [Enceph...
gi|19173608 - gi|19173608|ref|NP_597411.1| similarity to HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YJJ1_yeast [Enceph...
7.0E-82 [26..479] [15..382]
gi|7268543, gi|1... - pir||T05077 hypothetical protein T6K21.90 - Arabidopsis thaliana, gi|7268543|emb|CAB78793.1| putati...
5.0E-62 [131..340] [661..849]

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Predicted Domain #1
Region A:
Residues: [1-350]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVHQKNMS TLKQRKEDFV TGLNGGSITE INAVTSIALV TYISWNLLKN SNLMPPGISS  60
   61 VQYIIDFALN WVALLLSITI YASEPYLLNT LILLPCLLAF IYGKFTSSSK PSNPIYNKKK 120
  121 MITQRFQLEK KPYITAYRGG MLILTAIAIL AVDFPIFPRR FAKVETWGTS LMDLGVGSFV 180
  181 FSNGIVSSRA LLKNLSLKSK PSFLKNAFNA LKSGGTLLFL GLLRLFFVKN LEYQEHVTEY 240
  241 GVHWNFFITL SLLPLVLTFI DPVTRMVPRC SIAIFISCIY EWLLLKDDRT LNFLILADRN 300
  301 CFFSANREGI FSFLGYCSIF LWGQNTGFYL LGNKPTLNNL YKPSTQDVVA 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [351-498]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASKKSSTWDY WTSVTPLSGL CIWSTIFLVI SQLVFQYHPY SVSRRFANLP YTLWVITYNL  60
   61 LFLTGYCLTD KIFGNSSEYY KVAECLESIN SNGLFLFLLA NVSTGLVNMS MVTIDSSPLK 120
  121 SFLVLLAYCS FIAVISVFLY RKRIFIKL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle