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View Structure Prediction Details

Protein: PRY3
Organism: Saccharomyces cerevisiae
Length: 881 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRY3.

Description E-value Query
Range
Subject
Range
SPBPJ4664.02 - glycoprotein
YHU2_SCHPO - Uncharacterized threonine-rich GPI-anchored glycoprotein PJ4664.02 OS=Schizosaccharomyces pombe (str...
264.0 [0..83] [880..1538]
gi|15828996 - gi|15828996|ref|NP_326356.1| lipoprotein VSAC (fragment) [Mycoplasma pulmonis UAB CTIP]
gi|14089939, gi|... - pir||E90577 lipoprotein vsaC [imported] - Mycoplasma pulmonis (strain UAB CTIP) (fragment), gi|14089...
261.0 [0..126] [879..70]
gi|11263742 - gi|11263742|pir||T39174 hypothetical Serine/threonine repeat containing protein [imported] - fission...
255.0 [0..104] [881..151]
gi|39592304, gi|... - gi|39592304|emb|CAE75525.1| Hypothetical protein CBG23547 [Caenorhabditis briggsae], gi|187020927|em...
gi|157762282 - gi|157762282|ref|XP_001673483.1| Hypothetical protein CBG23547 [Caenorhabditis briggsae AF16]
248.0 [0..102] [876..1042]
gi|1346018, gi|5... - gi|535934|emb|CAA55024.1| flocculation FL01 [Saccharomyces cerevisiae], gi|1346018|sp|P32768|FLO1_YE...
219.0 [0..116] [877..308]

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Predicted Domain #1
Region A:
Residues: [1-168]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEFPISVLL GCLVAVKAQT TFPNFESDVL NEHNKFRALH VDTAPLTWSD TLATYAQNYA  60
   61 DQYDCSGVLT HSDGPYGENL ALGYTDTGAV DAWYGEISKY NYSNPGFSES TGHFTQVVWK 120
  121 STAEIGCGYK YCGTTWNNYI VCSYNPPGNY LGEFAEEVEP LISTVSSS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 232.67837
Match: 1cfeA
Description: P14A, NMR, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [169-297]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSSSSSTSTT SDTVSTISSS IMPAVAQGYT TTVSSAASSS SLKSTTINPA KTATLTASSS  60
   61 TVITSSTESV GSSTVSSASS SSVTTSYATS SSTVVSSDAT SSTTTTSSVA TSSSTTSSDP 120
  121 TSSTAAASS

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 14.44
Match:
Description: No description for 1m2vB was found.

Predicted Domain #3
Region A:
Residues: [298-620]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDPASSSAAA SSSASTENAA SSSSAISSSS SMVSAPLSST LTTSTASSRS VTSNSVNSVK  60
   61 FANTTVFSAQ TTSSVSASLS SSVAADDIQG STSKEATSSV SEHTSIVTSA TNAAQYATRL 120
  121 GSSSRSSSGA VSSSAVSQSV LNSVIAVNTD VSVTSVSSTA HTTKDTATTS VTASESITSE 180
  181 TAQASSSTEK NISNSAATSS SIYSNSASVS GHGVTYAAEY AITSEQSSAL ATSVPATNCS 240
  241 SIVKTTTLEN SSTTTITAIT KSTTTLATTA NNSTRAATAV TIDPTLDPTD NSASPTDNAK 300
  301 HTSTYGSSST GASLDSLRTT TSI

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 10.35
Match:
Description: No description for 1jv2B was found.

Predicted Domain #4
Region A:
Residues: [621-723]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVSSNTTQLV STCTSESDYS DSPSFAISTA TTTESNLITN TITASCSTDS NFPTSAASST  60
   61 DETAFTRTIS TSCSTLNGAS TQTSELTTSP MKTNTVVPAS SFP

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 10.35
Match:
Description: No description for 1jv2B was found.

Predicted Domain #5
Region A:
Residues: [724-797]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STTTTCLEND DTAFSSIYTE VNAATIINPG ETSSLASDFA TSEKPNEPTS VKSTSNEGTS  60
   61 STTTTYQQTV ATLY

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 11.79
Match:
Description: No description for 1ei3A was found.

Predicted Domain #6
Region A:
Residues: [798-881]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKPSSTSLGA RTTTGSNGRS TTSQQDGSAM HQPTSSIYTQ LKEGTSTTAK LSAYEGAATP  60
   61 LSIFQCNSLA GTIAAFVVAV LFAF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle