YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: YJL055W
Organism: Saccharomyces cerevisiae
Length: 245 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJL055W.

Description E-value Query
Range		 Subject
Range
YJF5_YEAST - LOG family protein YJL055W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YJL055W PE=1 ...
YJL055W - Putative protein of unknown function, proposed to be involved in the metabolism of purine and pyrimi...
 3.0E-81 [1..245] [1..245]
LOG4_ARATH - Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG4 OS=Arabidopsis thaliana GN=LOG4 PE=1 S...
 2.0E-66 [20..242] [15..215]
LOGLA_ORYSJ - Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL10 OS=Oryza sativa subsp. japo...
 1.0E-62 [19..235] [7..199]
gi|17429106 - gi|17429106|emb|CAD15794.1| conserved hypothetical protein 730 [Ralstonia solanacearum GMI1000]
gi|17546806 - gi|17546806|ref|NP_520208.1| hypothetical protein RSc2087 [Ralstonia solanacearum GMI1000]
 6.0E-57 [18..236] [1..194]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
 2.0E-55 [19..231] [9..211]

Back

Predicted Domain #1
Region A:
Residues: [1-245] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMEKNGGNS SRGGQVGGKS VCVYCGSSFG AKALYSESAE ELGALFHKLG WKLVYGGGTT  60
   61 GLMGKIARST MGPDLSGQVH GIIPNALVSK ERTDEDKEDV NKALLESVEN HKGATPISEE 120
  121 YGETTIVPDM HTRKRMMANL SDAFVAMPGG YGTFEEIMEC ITWSQLGIHN KPIILFNIDG 180
  181 FYDKLLEFLK HSIQERFISV KNGEIIQVAS TPQEVVDKIE KYVVPEGRFN LNWSDEGHAH 240
  241 EDCAK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 67.366532
Match: PF03641
Description: Possible lysine decarboxylase

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted functions:

Term Confidence Notes
catalytic activity 0.459062360506835 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle