| Protein: | NSP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 823 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NSP1.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-77 | [1..823] | [1..823] |
|
|
2.0E-62 | [674..823] | [4..138] |
|
|
6.0E-57 | [671..823] | [59..197] |
|
|
2.0E-54 | [24..582] | [470..1028] |
|
Region A: Residues: [1-68] |
1 11 21 31 41 51
| | | | | |
1 MNFNTPQQNK TPFSFGTANN NSNTTNQNSS TGAGAFGTGQ STFGFNNSAP NNTNNANSSI 60
61 TPAFGSNN
|
| Detection Method: |  |
| Confidence: | 14.54 |
| Match: | 1deqA |
| Description: | Fibrinogen |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [69-361] |
1 11 21 31 41 51
| | | | | |
1 TGNTAFGNSN PTSNVFGSNN STTNTFGSNS AGTSLFGSSS AQQTKSNGTA GGNTFGSSSL 60
61 FNNSTNSNTT KPAFGGLNFG GGNNTTPSST GNANTSNNLF GATANANKPA FSFGATTNDD 120
121 KKTEPDKPAF SFNSSVGNKT DAQAPTTGFS FGSQLGGNKT VNEAAKPSLS FGSGSAGANP 180
181 AGASQPEPTT NEPAKPALSF GTATSDNKTT NTTPSFSFGA KSDENKAGAT SKPAFSFGAK 240
241 PEEKKDDNSS KPAFSFGAKS NEDKQDGTAK PAFSFGAKPA EKNNNETSKP AFS
|
| Detection Method: | |
| Confidence: | 13.46 |
| Match: | 1jv2B |
| Description: | Hybrid domain of integrin beta; Integrin beta A domain; Integrin beta tail domain; Integrin beta EGF-like domains |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [362-525] |
1 11 21 31 41 51
| | | | | |
1 FGAKSDEKKD GDASKPAFSF GAKPDENKAS ATSKPAFSFG AKPEEKKDDN SSKPAFSFGA 60
61 KSNEDKQDGT AKPAFSFGAK PAEKNNNETS KPAFSFGAKS DEKKDGDASK PAFSFGAKSD 120
121 EKKDSDSSKP AFSFGTKSNE KKDSGSSKPA FSFGAKPDEK KNDE
|
| Detection Method: | |
| Confidence: | 13.46 |
| Match: | 1jv2B |
| Description: | Hybrid domain of integrin beta; Integrin beta A domain; Integrin beta tail domain; Integrin beta EGF-like domains |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [526-628] |
1 11 21 31 41 51
| | | | | |
1 VSKPAFSFGA KANEKKESDE SKSAFSFGSK PTGKEEGDGA KAAISFGAKP EEQKSSDTSK 60
61 PAFTFGAQKD NEKKTEESST GKSTADVKSS DSLKLNSKPV ELK
|
| Detection Method: | |
| Confidence: | 13.46 |
| Match: | 1jv2B |
| Description: | Hybrid domain of integrin beta; Integrin beta A domain; Integrin beta tail domain; Integrin beta EGF-like domains |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [629-823] |
1 11 21 31 41 51
| | | | | |
1 PVSLDNKTLD DLVTKWTNQL TESASHFEQY TKKINSWDQV LVKGGEQISQ LYSDAVMAEH 60
61 SQNKIDQSLQ YIERQQDELE NFLDNFETKT EALLSDVVST SSGAAANNND QKRQQAYKTA 120
121 QTLDENLNSL SSNLSSLIVE INNVSNTFNK TTNIDINNED ENIQLIKILN SHFDALRSLD 180
181 DNSTSLEKQI NSIKK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
