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View Structure Prediction Details

Protein: RNR2
Organism: Saccharomyces cerevisiae
Length: 399 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNR2.

Description E-value Query
Range
Subject
Range
gi|15826569 - gi|15826569|pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer
0.0 [1..399] [21..419]
RnrS-PA - The gene Ribonucleoside diphosphate reductase small subunit is referred to in FlyBase by the symbol ...
gi|220955972, gi... - gi|220955972|gb|ACL90529.1| RnrS-PA [synthetic construct], gi|220946286|gb|ACL85686.1| CG8975-PA [sy...
0.0 [7..399] [4..393]
RIR2_SPISO - Ribonucleoside-diphosphate reductase small chain OS=Spisula solidissima PE=2 SV=2
0.0 [29..399] [3..384]
RIR2_NEUCR - Ribonucleoside-diphosphate reductase small chain OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1...
RIR2_NEUCR - Ribonucleoside-diphosphate reductase small chain OS=Neurospora crassa GN=rnr-2 PE=3 SV=2
0.0 [5..399] [6..410]
gi|10432587 - gi|10432587|dbj|BAB13815.1| ribonucleotide reductase small subunit [Lentinula edodes]
0.0 [2..399] [11..418]
RRM2 - ribonucleotide reductase M2
gi|123981920, gi... - gi|123996753|gb|ABM85978.1| ribonucleotide reductase M2 polypeptide [synthetic construct], gi|123981...
0.0 [30..399] [8..389]
RIR2_MOUSE - Ribonucleoside-diphosphate reductase subunit M2 OS=Mus musculus GN=Rrm2 PE=1 SV=1
0.0 [30..399] [8..390]
gi|11878241 - gi|11878241|gb|AAG40862.1| ribonucleotide reductase [Emericella nidulans]
0.0 [5..399] [6..406]

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Predicted Domain #1
Region A:
Residues: [1-399]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKETPSKAA ADALSDLEIK DSKSNLNKEL ETLREENRVK SDMLKEKLSK DAENHKAYLK  60
   61 SHQVHRHKLK EMEKEEPLLN EDKERTVLFP IKYHEIWQAY KRAEASFWTA EEIDLSKDIH 120
  121 DWNNRMNENE RFFISRVLAF FAASDGIVNE NLVENFSTEV QIPEAKSFYG FQIMIENIHS 180
  181 ETYSLLIDTY IKDPKESEFL FNAIHTIPEI GEKAEWALRW IQDADALFGE RLVAFASIEG 240
  241 VFFSGSFASI FWLKKRGMMP GLTFSNELIC RDEGLHTDFA CLLFAHLKNK PDPAIVEKIV 300
  301 TEAVEIEQRY FLDALPVALL GMNADLMNQY VEFVADRLLV AFGNKKYYKV ENPFDFMENI 360
  361 SLAGKTNFFE KRVSDYQKAG VMSKSTKQEA GAFTFNEDF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10143.0
Match: 1jk0A_
Description: Ribonucleotide reductase R2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor 12.7205287868529 bayes_pls_golite062009
ribonucleoside-diphosphate reductase activity 12.6679910771829 bayes_pls_golite062009
oxidoreductase activity, acting on CH or CH2 groups 12.0783326936172 bayes_pls_golite062009
class I ribonucleotide reductase activity 7.27682621818194 bayes_pls_golite062009
oxidoreductase activity 2.7065388366096 bayes_pls_golite062009
binding 2.38747290927526 bayes_pls_golite062009
nucleic acid binding 1.65619019230429 bayes_pls_golite062009
DNA binding 1.60520679245579 bayes_pls_golite062009
protein binding 1.35559475972187 bayes_pls_golite062009
ion binding 0.214820110894452 bayes_pls_golite062009
cation binding 0.203880627974907 bayes_pls_golite062009
metal ion binding 0.203880627974907 bayes_pls_golite062009
catalytic activity 0.197328811494233 bayes_pls_golite062009
transition metal ion binding 0.168785605665701 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle