YRC Public Data Repository - Protein Structure Prediction

Protein:	YJL016W
Organism:	Saccharomyces cerevisiae
Length:	171 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJL016W.

Description	E-value	Query Range	Subject Range
YJL016W - Putative protein of unknown function; GFP-fusion protein localizes to the cytoplasm; conserved in cl... YJB6_YEAST - Uncharacterized protein YJL016W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YJL016W ... gi\|151945063 - gi\|151945063\|gb\|EDN63314.1\| conserved protein [Saccharomyces cerevisiae YJM789]	349.0	[0..1]	[171..391]
gi\|49641417 - gi\|49641417\|emb\|CAH01135.1\| KLLA0C01969p [Kluyveromyces lactis] gi\|50304657, gi\|... - gi\|50304657\|ref\|XP_452284.1\| unnamed protein product [Kluyveromyces lactis], gi\|49641417\|emb\|CAH0113...	92.0	[0..1]	[52..376]
gi\|49525968, gi\|... - gi\|50288461\|ref\|XP_446660.1\| unnamed protein product [Candida glabrata], gi\|49525968\|emb\|CAG59587.1\|... gi\|49525968 - gi\|49525968\|emb\|CAG59587.1\| unnamed protein product [Candida glabrata]	90.0	[0..1]	[142..479]
gi\|68479199, gi\|... - gi\|68479328\|ref\|XP_716343.1\| potential CCR4-NOT complex associated factor Caf120p [Candida albicans ... orf19.5274, orf1... - orf19.5274 CGDID:CAL0003618 Assembly 19, Contig19-10223 (108130, 105065) CDS, reverse complemented, ...	89.0	[0..1]	[57..326]
gi\|45199203, gi\|... - gi\|45199203\|ref\|NP_986232.1\| AFR684Cp [Ashbya gossypii ATCC 10895], gi\|44985343\|gb\|AAS54056.1\| AFR68... gi\|44985343 - gi\|44985343\|gb\|AAS54056.1\| AFR684Cp [Ashbya gossypii ATCC 10895]	88.0	[0..1]	[53..362]
gi\|49655573, gi\|... - gi\|50422657\|ref\|XP_459905.1\| hypothetical protein DEHA0E14355g [Debaryomyces hansenii CBS767], gi\|49...	86.0	[0..1]	[84..331]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRFIIPLMD CARLYGRPVQ FKTERTDINS LMFGLPKLPS VDYFAEEEIA HLMTQEFNPL  60
   61 KEKDTDDTMA LTMSRFSSYL QERMTKVSKR NTELNFRTFS DVMGMYNTTR DHSKLNCMSD 120
  121 KDNSVKEFSL SDKSNVSSET TNMMNQLQVN AHEYKSSMCE RPIVASTSPI A

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits