YRC Public Data Repository - Protein Structure Prediction

Protein:	SYS1
Organism:	Saccharomyces cerevisiae
Length:	203 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYS1.

Description	E-value	Query Range	Subject Range
gi\|151945072 - gi\|151945072\|gb\|EDN63323.1\| conserved protein [Saccharomyces cerevisiae YJM789] SYS1 - Integral membrane protein of the Golgi required for targeting of the Arf-like GTPase Arl3p to the Go... SYS1_YEAST - Protein SYS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SYS1 PE=1 SV=1	2.0E-76	[1..203]	[1..203]
gi\|14270398 - gi\|14270398\|emb\|CAC39448.1\| hypothetical protein [Homo sapiens]	7.0E-55	[20..163]	[43..186]
SYS1_MOUSE - Protein SYS1 homolog OS=Mus musculus GN=Sys1 PE=2 SV=1 gi\|149042951, gi... - gi\|149042951\|gb\|EDL96525.1\| rCG32134, isoform CRA_a [Rattus norvegicus], gi\|149042949\|gb\|EDL96523.1\|...	2.0E-52	[20..163]	[5..148]
CG11753-PA - This gene is referred to in FlyBase by the symbol Dmel\CG11753 (CG11753, FBgn0037603). It is a prote... gi\|194200165, gi... - gi\|195572509\|ref\|XP_002104238.1\| GD18557 [Drosophila simulans], gi\|194200165\|gb\|EDX13741.1\| GD18557 ... gi\|220948972, gi... - gi\|220957698\|gb\|ACL91392.1\| CG11753-PA [synthetic construct], gi\|220948972\|gb\|ACL87029.1\| CG11753-PA...	4.0E-50	[20..162]	[6..148]
gi\|25373347, gi\|... - gi\|5902377\|gb\|AAD55479.1\|AC009322_19 Unknown protein [Arabidopsis thaliana], gi\|30699474\|ref\|NP_8499...	2.0E-44	[24..164]	[7..146]

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Predicted Domain #1

Region A:
Residues: [1-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSIRRYLRV PNELKPSQIF KQDSLSPSKI GLQIVLLQIF YYTTAIVLFY CWAKLAGYDL  60
   61 NIKEWLFSWE NIDFTNAYGL SISLLWLLDS LICVFFLTVI VGRSKLAWDF AITIHAINFI 120
  121 VVFLYTRKFP SFSWFFLQIL SSLILIFLGT WTTRWRELRD TFFEGLVDPN EGEVGLVTPS 180
  181 QQHSNHSELE QSPIQLKDLE SQI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits