YRC Public Data Repository - Protein Structure Prediction

Protein:	IRC24
Organism:	Saccharomyces cerevisiae
Length:	263 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IRC24.

Description	E-value	Query Range	Subject Range
FABG_THEMA - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima GN=fabG PE=3 SV=1 FABG_THEMA - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / D...	4.0E-85	[2..259]	[5..246]
gi\|25283158 - pir\|\|C83961 3-oxoacyl-(acyl-carrier protein) reductase fabG [imported] - Bacillus halodurans (strain... gi\|10175111, gi\|... - gi\|15615054\|ref\|NP_243357.1\| 3-oxoacyl-(acyl-carrier protein) reductase [Bacillus halodurans C-125],...	1.0E-83	[2..259]	[4..246]
gi\|18310052, gi\|... - gi\|18310052\|ref\|NP_561986.1\| 3-ketoacyl-(acyl-carrier-protein) reductase [Clostridium perfringens st...	1.0E-83	[3..259]	[5..246]
gi\|1502421 - gi\|1502421\|gb\|AAC44307.1\| 3-ketoacyl-acyl carrier protein reductase gi\|1502421\|gb\|AA... - 3-ketoacyl-acyl carrier protein reductase	2.0E-81	[3..259]	[5..246]
gi\|221313791 - gi\|221313791\|ref\|ZP_03595596.1\| beta-ketoacyl-acyl carrier protein reductase [Bacillus subtilis subs... gi\|221318715 - gi\|221318715\|ref\|ZP_03600009.1\| beta-ketoacyl-acyl carrier protein reductase [Bacillus subtilis subs... gi\|221322986 - gi\|221322986\|ref\|ZP_03604280.1\| beta-ketoacyl-acyl carrier protein reductase [Bacillus subtilis subs... FABG_BACSU - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Bacillus subtilis GN=fabG PE=3 SV=3 FABG_BACSU - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Bacillus subtilis (strain 168) GN=fabG PE=3 SV=3	3.0E-81	[3..259]	[5..246]
gi\|90429999, gi\|... - gi\|90586379\|ref\|ZP_01242077.1\| 3-oxoacyl-(acyl-carrier-protein) reductase [Staphylococcus aureus sub... gi\|82750835, gi\|... - gi\|82750835\|ref\|YP_416576.1\| 3-oxoacyl-(acyl-carrier protein) reductase [Staphylococcus aureus RF122... gi\|90426550, gi\|... - gi\|90584394\|ref\|ZP_01240127.1\| 3-oxoacyl-(acyl-carrier-protein) reductase [Staphylococcus aureus sub... FABG_STAAC - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain COL) GN=fabG PE=3 S... gi\|227558554, gi... - gi\|227558554\|ref\|ZP_03988601.1\| 3-oxoacyl-(acyl-carrier protein) reductase [Staphylococcus aureus su... gi\|227900345, gi... - gi\|227900345\|ref\|ZP_04018150.1\| 3-oxoacyl-(acyl-carrier protein) reductase [Staphylococcus aureus su... gi\|251814140, gi... - gi\|251814140\|ref\|ZP_04828613.1\| 3-oxoacyl-(acyl-carrier protein) reductase [Staphylococcus aureus su... gi\|253728585, gi... - gi\|253733531\|ref\|ZP_04867696.1\| 3-oxoacyl-(acyl-carrier protein) reductase [Staphylococcus aureus su... gi\|161509402, gi... - gi\|161509402\|ref\|YP_001575061.1\| 3-oxoacyl-[acyl-carrier-protein] reductase [Staphylococcus aureus s... FABG_STAAN - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain N315) GN=fabG PE=1 ... FABG_STAAR - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain MRSA252) GN=fabG PE... FABG_STAAS - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain MSSA476) GN=fabG PE... gi\|156721687, gi... - gi\|156979552\|ref\|YP_001441811.1\| 3-oxoacyl-#acyl-carrier protein reductase [Staphylococcus aureus su... gi\|25283236, gi\|... - pir\|\|B89896 3-oxoacyl-(acyl-carrier protein) reductase [imported] - Staphylococcus aureus (strain N3... FABG_STAAW - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain MW2) GN=fabG PE=3 S... FABG_STAAM - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)...	1.0E-80	[1..259]	[3..246]
TRNH5_ARATH - Tropinone reductase homolog At2g29260, chloroplastic OS=Arabidopsis thaliana GN=At2g29260 PE=2 SV=1	3.0E-80	[2..260]	[70..315]
gi\|16800987 - gi\|16800987\|ref\|NP_471255.1\| hypothetical protein lin1921 [Listeria innocua Clip11262] gi\|25283285, gi\|... - pir\|\|AG1672 3-ketoacyl-acyl carrier protein reductase homolog fabG [imported] - Listeria innocua (st...	1.0E-79	[2..259]	[5..247]
gi\|17130984, gi\|... - gi\|17229386\|ref\|NP_485934.1\| 3-ketoacyl-(acyl-carrier-protein) reductase [Nostoc sp. PCC 7120], gi\|1... gi\|25283435 - pir\|\|AH2042 3-oxoacyl-[acyl-carrier protein] reductase [imported] - Nostoc sp. (strain PCC 7120)	2.0E-79	[2..260]	[10..251]
gi\|16803847 - gi\|16803847\|ref\|NP_465332.1\| hypothetical protein lmo1807 [Listeria monocytogenes EGD-e] gi\|25283283, gi\|... - pir\|\|AG1300 3-ketoacyl-acyl carrier protein reductase homolog fabG [imported] - Listeria monocytogen... gi\|224501391 - gi\|224501391\|ref\|ZP_03669698.1\| hypothetical protein LmonFR_02530 [Listeria monocytogenes FSL R2-561... gi\|254831591, gi... - gi\|254831591\|ref\|ZP_05236246.1\| hypothetical protein Lmon1_09568 [Listeria monocytogenes 10403S], gi...	2.0E-79	[2..259]	[5..247]

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Predicted Domain #1

Region A:
Residues: [1-263]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKVILITGA SRGIGLQLVK TVIEEDDECI VYGVARTEAG LQSLQREYGA DKFVYRVLDI  60
   61 TDRSRMEALV EEIRQKHGKL DGIVANAGML EPVKSISQSN SEHDIKQWER LFDVNFFSIV 120
  121 SLVALCLPLL KSSPFVGNIV FVSSGASVKP YNGWSAYGCS KAALNHFAMD IASEEPSDKV 180
  181 RAVCIAPGVV DTQMQKDIRE TLGPQGMTPK ALERFTQLYK TSSLLDPKVP AAVLAQLVLK 240
  241 GIPDSLNGQY LRYNDERLGP VQG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	225.529817
Match:	2ae1__
Description:	Tropinone reductase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits