YRC Public Data Repository - Protein Structure Prediction

Protein:	YIR035C
Organism:	Saccharomyces cerevisiae
Length:	254 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YIR035C.

Description	E-value	Query Range	Subject Range
FABG_THEMA - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima GN=fabG PE=3 SV=1 FABG_THEMA - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / D...	1.0E-83	[2..250]	[5..246]
gi\|25283158 - pir\|\|C83961 3-oxoacyl-(acyl-carrier protein) reductase fabG [imported] - Bacillus halodurans (strain... gi\|10175111, gi\|... - gi\|15615054\|ref\|NP_243357.1\| 3-oxoacyl-(acyl-carrier protein) reductase [Bacillus halodurans C-125],...	3.0E-83	[2..250]	[4..246]
gi\|18310052, gi\|... - gi\|18310052\|ref\|NP_561986.1\| 3-ketoacyl-(acyl-carrier-protein) reductase [Clostridium perfringens st...	4.0E-83	[3..250]	[5..246]
gi\|1502421 - gi\|1502421\|gb\|AAC44307.1\| 3-ketoacyl-acyl carrier protein reductase gi\|1502421\|gb\|AA... - 3-ketoacyl-acyl carrier protein reductase	8.0E-81	[3..250]	[5..246]
gi\|221313791 - gi\|221313791\|ref\|ZP_03595596.1\| beta-ketoacyl-acyl carrier protein reductase [Bacillus subtilis subs... gi\|221318715 - gi\|221318715\|ref\|ZP_03600009.1\| beta-ketoacyl-acyl carrier protein reductase [Bacillus subtilis subs... gi\|221322986 - gi\|221322986\|ref\|ZP_03604280.1\| beta-ketoacyl-acyl carrier protein reductase [Bacillus subtilis subs... FABG_BACSU - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Bacillus subtilis GN=fabG PE=3 SV=3 FABG_BACSU - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Bacillus subtilis (strain 168) GN=fabG PE=3 SV=3	2.0E-80	[3..250]	[5..246]
gi\|90429999, gi\|... - gi\|90586379\|ref\|ZP_01242077.1\| 3-oxoacyl-(acyl-carrier-protein) reductase [Staphylococcus aureus sub... gi\|82750835, gi\|... - gi\|82750835\|ref\|YP_416576.1\| 3-oxoacyl-(acyl-carrier protein) reductase [Staphylococcus aureus RF122... gi\|90426550, gi\|... - gi\|90584394\|ref\|ZP_01240127.1\| 3-oxoacyl-(acyl-carrier-protein) reductase [Staphylococcus aureus sub... FABG_STAAC - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain COL) GN=fabG PE=3 S... gi\|227558554, gi... - gi\|227558554\|ref\|ZP_03988601.1\| 3-oxoacyl-(acyl-carrier protein) reductase [Staphylococcus aureus su... gi\|227900345, gi... - gi\|227900345\|ref\|ZP_04018150.1\| 3-oxoacyl-(acyl-carrier protein) reductase [Staphylococcus aureus su... gi\|251814140, gi... - gi\|251814140\|ref\|ZP_04828613.1\| 3-oxoacyl-(acyl-carrier protein) reductase [Staphylococcus aureus su... gi\|253728585, gi... - gi\|253733531\|ref\|ZP_04867696.1\| 3-oxoacyl-(acyl-carrier protein) reductase [Staphylococcus aureus su... gi\|161509402, gi... - gi\|161509402\|ref\|YP_001575061.1\| 3-oxoacyl-[acyl-carrier-protein] reductase [Staphylococcus aureus s... FABG_STAAN - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain N315) GN=fabG PE=1 ... FABG_STAAR - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain MRSA252) GN=fabG PE... FABG_STAAS - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain MSSA476) GN=fabG PE... gi\|156721687, gi... - gi\|156979552\|ref\|YP_001441811.1\| 3-oxoacyl-#acyl-carrier protein reductase [Staphylococcus aureus su... gi\|25283236, gi\|... - pir\|\|B89896 3-oxoacyl-(acyl-carrier protein) reductase [imported] - Staphylococcus aureus (strain N3... FABG_STAAW - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain MW2) GN=fabG PE=3 S... FABG_STAAM - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)...	1.0E-79	[1..250]	[3..246]
gi\|16800987 - gi\|16800987\|ref\|NP_471255.1\| hypothetical protein lin1921 [Listeria innocua Clip11262] gi\|25283285, gi\|... - pir\|\|AG1672 3-ketoacyl-acyl carrier protein reductase homolog fabG [imported] - Listeria innocua (st...	1.0E-78	[2..250]	[5..247]
gi\|11351851 - pir\|\|G83378 probable short-chain dehydrogenase PA2142 [imported] - Pseudomonas aeruginosa (strain PA... gi\|9948159, gi\|1... - gi\|9948159\|gb\|AAG05530.1\|AE004641_9 probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]...	2.0E-78	[2..251]	[42..285]
gi\|16803847 - gi\|16803847\|ref\|NP_465332.1\| hypothetical protein lmo1807 [Listeria monocytogenes EGD-e] gi\|25283283, gi\|... - pir\|\|AG1300 3-ketoacyl-acyl carrier protein reductase homolog fabG [imported] - Listeria monocytogen... gi\|224501391 - gi\|224501391\|ref\|ZP_03669698.1\| hypothetical protein LmonFR_02530 [Listeria monocytogenes FSL R2-561... gi\|254831591, gi... - gi\|254831591\|ref\|ZP_05236246.1\| hypothetical protein Lmon1_09568 [Listeria monocytogenes 10403S], gi...	2.0E-78	[2..250]	[5..247]
gi\|17130984, gi\|... - gi\|17229386\|ref\|NP_485934.1\| 3-ketoacyl-(acyl-carrier-protein) reductase [Nostoc sp. PCC 7120], gi\|1... gi\|25283435 - pir\|\|AH2042 3-oxoacyl-[acyl-carrier protein] reductase [imported] - Nostoc sp. (strain PCC 7120)	4.0E-78	[2..250]	[10..250]

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Predicted Domain #1

Region A:
Residues: [1-254]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKVILVTGV SRGIGKSIVD VLFSLDKDTV VYGVARSEAP LKKLKEKYGD RFFYVVGDIT  60
   61 EDSVLKQLVN AAVKGHGKID SLVANAGVLE PVQNVNEIDV NAWKKLYDIN FFSIVSLVGI 120
  121 ALPELKKTNG NVVFVSSDAC NMYFSSWGAY GSSKAALNHF AMTLANEERQ VKAIAVAPGI 180
  181 VDTDMQVNIR ENVGPSSMSA EQLKMFRGLK ENNQLLDSSV PATVYAKLAL HGIPDGVNGQ 240
  241 YLSYNDPALA DFMP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	201.190949
Match:	1ae1A_
Description:	Tropinone reductase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits