YRC Public Data Repository - Protein Structure Prediction

Protein:	DCG1
Organism:	Saccharomyces cerevisiae
Length:	244 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DCG1.

Description	E-value	Query Range	Subject Range
DCG1 - Protein of unknown function, expression is sensitive to nitrogen catabolite repression and regulated... DCG1_YEAST - Protein DCG1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DCG1 PE=2 SV=1	4.0E-56	[1..244]	[1..244]
MURI_CARST - Glutamate racemase OS=Carnobacterium sp. (strain St2) GN=murI PE=3 SV=1	8.0E-52	[19..241]	[17..223]
MURI_LISIN - Glutamate racemase OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=murI PE=3 SV=1 MURI_LISIN - Glutamate racemase OS=Listeria innocua GN=murI PE=3 SV=1	5.0E-49	[19..241]	[16..222]
gi\|127765628, gi... - gi\|153190644\|ref\|ZP_01938007.1\| glutamate racemase [Listeria monocytogenes J2818], gi\|127765628\|gb\|E... gi\|133727519, gi... - gi\|254872801\|ref\|ZP_05245511.1\| glutamate racemase [Listeria monocytogenes FSL N1-017], gi\|153166592... gi\|153174316, gi... - gi\|254828597\|ref\|ZP_05233284.1\| glutamate racemase [Listeria monocytogenes FSL N3-165], gi\|153174316... gi\|153179317, gi... - gi\|254936234\|ref\|ZP_05267931.1\| glutamate racemase [Listeria monocytogenes F6900], gi\|153179317\|ref\|... gi\|254932885, gi... - gi\|254932885\|ref\|ZP_05266244.1\| glutamate racemase [Listeria monocytogenes HPB2262], gi\|153201942\|re... MURI_LISMC - Glutamate racemase OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=murI PE=3 SV=1 MURI_LISMC - Glutamate racemase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=murI PE=3 SV=1 gi\|254823509 - gi\|254823509\|ref\|ZP_05228510.1\| glutamate racemase [Listeria monocytogenes FSL J1-194] gi\|254852894 - gi\|254852894\|ref\|ZP_05242242.1\| glutamate racemase [Listeria monocytogenes FSL R2-503] gi\|254878575 - gi\|254878575\|ref\|ZP_05251285.1\| glutamate racemase [Listeria monocytogenes FSL J2-071] gi\|254993152 - gi\|254993152\|ref\|ZP_05275342.1\| glutamate racemase [Listeria monocytogenes FSL J2-064] gi\|255025221 - gi\|255025221\|ref\|ZP_05297207.1\| glutamate racemase [Listeria monocytogenes FSL J2-003] gi\|255522515 - gi\|255522515\|ref\|ZP_05389752.1\| glutamate racemase [Listeria monocytogenes FSL J1-175] gi\|224503808 - gi\|224503808\|ref\|ZP_03672115.1\| glutamate racemase [Listeria monocytogenes FSL R2-561] gi\|224499092 - gi\|224499092\|ref\|ZP_03667441.1\| glutamate racemase [Listeria monocytogenes Finland 1988] MURI_LISMO - Glutamate racemase OS=Listeria monocytogenes GN=murI PE=1 SV=1 gi\|47097378, gi\|... - gi\|47097378\|ref\|ZP_00234930.1\| glutamate racemase [Listeria monocytogenes str. 1/2a F6854], gi\|47014... MURI_LISMF - Glutamate racemase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=murI PE=3 SV=1 gi\|126942573, gi... - gi\|254898602\|ref\|ZP_05258526.1\| glutamate racemase [Listeria monocytogenes J0161], gi\|153184602\|ref\|... MURI_LISMO - Glutamate racemase OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=murI PE=1... gi\|153196014, gi... - gi\|254830009\|ref\|ZP_05234664.1\| glutamate racemase [Listeria monocytogenes 10403S], gi\|153196014\|ref...	5.0E-49	[19..241]	[16..222]
gi\|149025005, gi... - gi\|149025005\|ref\|ZP_01836385.1\| glutamate racemase [Streptococcus pneumoniae SP23-BS72], gi\|14792949... gi\|147764244, gi... - gi\|149011254\|ref\|ZP_01832501.1\| glutamate racemase [Streptococcus pneumoniae SP19-BS75], gi\|14776424... gi\|149006464, gi... - gi\|149006464\|ref\|ZP_01830163.1\| glutamate racemase [Streptococcus pneumoniae SP18-BS74], gi\|14776176... MURI_STRZJ - Glutamate racemase OS=Streptococcus pneumoniae (strain JJA) GN=murI PE=3 SV=1 MURI_STRPJ - Glutamate racemase OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=murI PE=3 SV=1 MURI_STRZT - Glutamate racemase OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=murI PE=3 SV=1 MURI_STRPS - Glutamate racemase OS=Streptococcus pneumoniae (strain CGSP14) GN=murI PE=3 SV=1 gi\|242245075, gi... - gi\|242245075\|ref\|ZP_04799512.1\| glutamate racemase [Streptococcus pneumoniae TCH8431/19A], gi\|242236... MURI_STRZP - Glutamate racemase OS=Streptococcus pneumoniae (strain P1031) GN=murI PE=3 SV=1 MURI_STRP7 - Glutamate racemase OS=Streptococcus pneumoniae (strain 70585) GN=murI PE=3 SV=1 gi\|183575767, gi... - gi\|183575767\|gb\|EDT96295.1\| glutamate racemase [Streptococcus pneumoniae CDC3059-06], gi\|168494203\|r... MURI_STRP2 - Glutamate racemase OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=murI PE=3 SV=1 gi\|183573878, gi... - gi\|183573878\|gb\|EDT94406.1\| glutamate racemase [Streptococcus pneumoniae CDC0288-04], gi\|168491804\|r... MURI_STRPN - Glutamate racemase OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=murI PE=3... MURI_STRPI - Glutamate racemase OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=murI PE=3 SV=1 gi\|168574930, gi... - gi\|183578940\|gb\|EDT99468.1\| glutamate racemase [Streptococcus pneumoniae MLV-016], gi\|168574930\|ref\|... gi\|148998745, gi... - gi\|148998745\|ref\|ZP_01826183.1\| glutamate racemase [Streptococcus pneumoniae SP11-BS70], gi\|14775543... gi\|168483413, gi... - gi\|172043246\|gb\|EDT51292.1\| glutamate racemase [Streptococcus pneumoniae CDC1873-00], gi\|168483413\|r... MURI_STRPN - Glutamate racemase OS=Streptococcus pneumoniae GN=murI PE=3 SV=1 gi\|147928106, gi... - gi\|148993339\|ref\|ZP_01822879.1\| glutamate racemase [Streptococcus pneumoniae SP9-BS68], gi\|147928106... gi\|168489841, gi... - gi\|183571721\|gb\|EDT92249.1\| glutamate racemase [Streptococcus pneumoniae SP195], gi\|168489841\|ref\|ZP... MURI_STRR6 - Glutamate racemase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=murI PE=3 SV=1 gi\|168487311, gi... - gi\|183569790\|gb\|EDT90318.1\| glutamate racemase [Streptococcus pneumoniae CDC1087-00], gi\|168487311\|r...	2.0E-48	[19..240]	[17..221]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	3.0E-48	[19..239]	[17..222]
gi\|25291677 - pir\|\|AF1818 glutamate racemase [imported] - Nostoc sp. (strain PCC 7120) MURI_NOSS1 - Glutamate racemase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=murI PE=3 SV=1	4.0E-47	[19..240]	[35..238]
MURI_STAAN - Glutamate racemase OS=Staphylococcus aureus (strain N315) GN=murI PE=1 SV=1 MURI_STAAW - Glutamate racemase OS=Staphylococcus aureus (strain MW2) GN=murI PE=3 SV=1 gi\|87161415\|ref\|... - glutamate racemase [Staphylococcus aureus subsp. aureus USA300], glutamate racemase [Staphylococcus ... MURI_STAAM - Glutamate racemase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=murI PE=3 SV=1 MURI_STAAT - Glutamate racemase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=murI PE=3 SV=1 MURI_STAA8 - Glutamate racemase OS=Staphylococcus aureus (strain NCTC 8325) GN=murI PE=3 SV=1 gi\|221138657 - gi\|221138657\|ref\|ZP_03563459.1\| glutamate racemase [Staphylococcus aureus subsp. aureus str. JKD6008... MURI_STAA3 - Glutamate racemase OS=Staphylococcus aureus (strain USA300) GN=murI PE=3 SV=1 gi\|269202763\|ref... - glutamate racemase [Staphylococcus aureus subsp. aureus ED98] gi\|221140452 - gi\|221140452\|ref\|ZP_03564945.1\| glutamate racemase [Staphylococcus aureus subsp. aureus str. JKD6009... MURI_STAA2 - Glutamate racemase OS=Staphylococcus aureus (strain JH1) GN=murI PE=3 SV=1 MURI_STAA9 - Glutamate racemase OS=Staphylococcus aureus (strain JH9) GN=murI PE=3 SV=1 gi\|251802426, gi... - gi\|251814055\|ref\|ZP_04828528.1\| glutamate racemase [Staphylococcus aureus subsp. aureus TCH70], gi\|2... gi\|253317067 - gi\|253317067\|ref\|ZP_04840280.1\| glutamate racemase [Staphylococcus aureus subsp. aureus str. CF-Mars... MURI_STAAS - Glutamate racemase OS=Staphylococcus aureus (strain MSSA476) GN=murI PE=3 SV=1 gi\|253731764, gi... - gi\|253731764\|ref\|ZP_04865929.1\| glutamate racemase [Staphylococcus aureus subsp. aureus USA300_TCH95... MURI_STAA1 - Glutamate racemase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=murI PE=3 SV=1 gi\|253733613, gi... - gi\|253733613\|ref\|ZP_04867778.1\| glutamate racemase [Staphylococcus aureus subsp. aureus TCH130], gi\|... MURI_STAAE - Glutamate racemase OS=Staphylococcus aureus (strain Newman) GN=murI PE=3 SV=1 gi\|255005936 - gi\|255005936\|ref\|ZP_05144537.2\| glutamate racemase [Staphylococcus aureus subsp. aureus Mu50-omega] gi\|25291670 - pir\|\|B89886 glutamate racemase [imported] - Staphylococcus aureus (strain N315) MURI_STAAC - Glutamate racemase OS=Staphylococcus aureus (strain COL) GN=murI PE=3 SV=1	8.0E-47	[19..242]	[16..224]
MURI_STAHA - Glutamate racemase OS=Staphylococcus haemolyticus GN=murI PE=3 SV=1	1.0E-46	[19..242]	[16..224]
MUI1_BACSU, MURI... - Glutamate racemase 1 OS=Bacillus subtilis GN=racE PE=1 SV=1, (P94556) Glutamate racemase 1 (EC 5.1.1... gi\|16079891, gi\|... - gi\|2635304\|emb\|CAB14799.1\| glutamate racemase [Bacillus subtilis subsp. subtilis str. 168], gi\|16079...	2.0E-46	[19..239]	[17..222]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METRILVVNP NSSKSMTVSL RETIEKTFSM ESCKISYFTG PDTSPPQIDG QETSIKSMEA  60
   61 CLPLLIDDQE SVYYFQKFNG ILIACFSDHP LVAKIKDRAA KEKADVSIVG LL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.69897
Match:	1b73A_
Description:	Glutamate racemase
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [113-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSSINYCNLV GKKFSIITSN KEWIPILNNS VESKFLTGNT VNKNLWKGTV STDLQVLDLH  60
   61 SPENFQQIAE IIYRENIKKL DSDIVILGCA GFSGLQNKLA KTFQRDGTLF LDTIEIGLQI 120
  121 LITMIRFVNS QK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.69897
Match:	1b73A_
Description:	Glutamate racemase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits