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View Structure Prediction Details

Protein: RPR2
Organism: Saccharomyces cerevisiae
Length: 144 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPR2.

Description E-value Query
Range
Subject
Range
gi|57209846, gi|... - gi|57209846|emb|CAI41822.1| ribonuclease P 21kDa subunit [Homo sapiens], gi|168986060|emb|CAQ08317.1...
132.0 [0..28] [144..5]
gi|149029330, gi... - gi|50657376|ref|NP_001002831.1| ribonuclease P 21 [Rattus norvegicus], gi|46237678|emb|CAE84051.1| h...
129.0 [0..28] [144..5]
gi|56805545 - gi|56805545|dbj|BAD83394.1| hypothetical protein FLJ22638 [Sus scrofa]
128.0 [0..28] [144..5]
RPP21_MACMU - Ribonuclease P protein subunit p21 OS=Macaca mulatta GN=RPP21 PE=3 SV=1
128.0 [0..28] [144..5]
gi|20306725 - gi|20306725|gb|AAH28491.1| Ribonuclease P 21 subunit (human) [Mus musculus]
128.0 [0..28] [144..5]
gi|194677480, gi... - gi|76650632|ref|XP_872832.1| PREDICTED: similar to ribonuclease P 21kDa subunit isoform 1 [Bos tauru...
127.0 [0..28] [144..42]

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Predicted Domain #1
Region A:
Residues: [1-144]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKAHGGKM KPEIDENGTL LVPPPRTIAN QDHFHRLNYL YQISAYQTRA RQKARTDAHT  60
   61 PLARNYIKSM DLISKKTKTS LLPTIKRTIC KKCHRLLWTP KKLEITSDGA LSVMCGCGTV 120
  121 KRFNIGADPN YRTYSEREGN LLNS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.39794
Match: 1x0tA
Description: Crystal structure of ribonuclease P protein Ph1601p from Pyrococcus horikoshii OT3
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle