YRC Public Data Repository - Protein Structure Prediction

Protein:	YIL168W
Organism:	Saccharomyces cerevisiae
Length:	127 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YIL168W.

Description	E-value	Query Range	Subject Range
gi\|11066277 - gi\|11066277\|gb\|AAG28533.1\|AF198621_4 cysteine synthase [Geobacillus stearothermophilus]	7.0E-39	[4..126]	[10..132]
CYSK_BACSU - Cysteine synthase OS=Bacillus subtilis (strain 168) GN=cysK PE=1 SV=3 gi\|221321401 - gi\|221321401\|ref\|ZP_03602695.1\| cysteine synthetase A [Bacillus subtilis subsp. subtilis str. SMY] gi\|221317138 - gi\|221317138\|ref\|ZP_03598432.1\| cysteine synthetase A [Bacillus subtilis subsp. subtilis str. JH642] CYSK_BACSU - Cysteine synthase OS=Bacillus subtilis GN=cysK PE=1 SV=3 gi\|221312205 - gi\|221312205\|ref\|ZP_03594010.1\| cysteine synthetase A [Bacillus subtilis subsp. subtilis str. NCIB 3...	1.0E-38	[4..126]	[10..132]
gi\|227247508, gi... - gi\|227556072\|ref\|ZP_03986119.1\| cysteine synthase (o-acetylserine sulfhydrylase) family protein [Sta... gi\|269202133\|ref... - cysteine synthase [Staphylococcus aureus subsp. aureus ED98] gi\|253315218 - gi\|253315218\|ref\|ZP_04838431.1\| cysteine synthase A [Staphylococcus aureus subsp. aureus str. CF-Mar... gi\|253730981, gi... - gi\|253730981\|ref\|ZP_04865146.1\| cysteine synthase (o-acetylserine sulfhydrylase) family protein [Sta... gi\|227900600, gi... - gi\|227900600\|ref\|ZP_04018405.1\| cysteine synthase (o-acetylserine sulfhydrylase) family protein [Sta... gi\|251804219, gi... - gi\|251812231\|ref\|ZP_04826704.1\| cysteine synthase (o-acetylserine sulfhydrylase) family protein [Sta... gi\|25291764 - pir\|\|B89818 cysteine synthase (EC 4.2.99.8) [similarity] - Staphylococcus aureus (strain N315) gi\|151220687, gi... - gi\|151220687\|ref\|YP_001331509.1\| cysteine synthase-like protein [Staphylococcus aureus subsp. aureus... CYSK_STAAR - Cysteine synthase OS=Staphylococcus aureus (strain MRSA252) GN=cysK PE=3 SV=1 gi\|87201831, gi\|... - gi\|88194273\|ref\|YP_499065.1\| hypothetical protein SAOUHSC_00488 [Staphylococcus aureus subsp. aureus... gi\|253735248, gi... - gi\|253735248\|ref\|ZP_04869413.1\| cysteine synthase (o-acetylserine sulfhydrylase) family protein [Sta... CYSK_STAAW - Cysteine synthase OS=Staphylococcus aureus (strain MW2) GN=cysK PE=3 SV=1 gi\|87126032, gi\|... - gi\|87160058\|ref\|YP_493200.1\| cysteine synthase A [Staphylococcus aureus subsp. aureus USA300_FPR3757... gi\|255005306 - gi\|255005306\|ref\|ZP_05143907.2\| cysteine synthase A [Staphylococcus aureus subsp. aureus Mu50-omega] CYSK_STAAN - Cysteine synthase OS=Staphylococcus aureus (strain N315) GN=cysK PE=1 SV=1 CYSK_STAAM - Cysteine synthase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=cysK PE=3 SV=1 CYSK_STAAC - Cysteine synthase OS=Staphylococcus aureus (strain COL) GN=cysK PE=3 SV=1 CYSK_STAAS - Cysteine synthase OS=Staphylococcus aureus (strain MSSA476) GN=cysK PE=3 SV=1 gi\|156978841, gi... - gi\|156978841\|ref\|YP_001441100.1\| cysteine synthase #o-acetylserine sulfhydrylase homologue [Staphylo... gi\|161508753, gi... - gi\|161508753\|ref\|YP_001574412.1\| cysteine synthase [Staphylococcus aureus subsp. aureus USA300_TCH15... gi\|221142295 - gi\|221142295\|ref\|ZP_03566788.1\| cysteine synthase [Staphylococcus aureus subsp. aureus str. JKD6009] gi\|87126032\|gb\|A... - cysteine synthase A [Staphylococcus aureus subsp. aureus USA300], cysteine synthase A [Staphylococcu... gi\|221138562 - gi\|221138562\|ref\|ZP_03563364.1\| cysteine synthase [Staphylococcus aureus subsp. aureus str. JKD6008]	3.0E-38	[4..126]	[11..133]
gi\|126941294, gi... - gi\|254900992\|ref\|ZP_05260916.1\| hypothetical protein LmonJ_14298 [Listeria monocytogenes J0161], gi\|... gi\|127632144, gi... - gi\|254832456\|ref\|ZP_05237111.1\| hypothetical protein Lmon1_13961 [Listeria monocytogenes 10403S], gi... gi\|127766826, gi... - gi\|254913940\|ref\|ZP_05263952.1\| hypothetical protein LmonJ2_14128 [Listeria monocytogenes J2818], gi... gi\|133731392, gi... - gi\|254829314\|ref\|ZP_05234001.1\| hypothetical protein LmonocytogeFSL_12708 [Listeria monocytogenes FS... gi\|16802269 - gi\|16802269\|ref\|NP_463754.1\| hypothetical protein lmo0223 [Listeria monocytogenes EGD-e] gi\|153177877, gi... - gi\|254938270\|ref\|ZP_05269967.1\| hypothetical protein LmonF6_14121 [Listeria monocytogenes F6900], gi... gi\|224500326 - gi\|224500326\|ref\|ZP_03668675.1\| hypothetical protein LmonF1_11919 [Listeria monocytogenes Finland 19... gi\|25291759, gi\|... - pir\|\|AH1102 cysteine synthase (EC 4.2.99.8) [similarity] - Listeria monocytogenes (strain EGD-e), gi... gi\|224503457 - gi\|224503457\|ref\|ZP_03671764.1\| hypothetical protein LmonFR_13267 [Listeria monocytogenes FSL R2-561... gi\|47014362, gi\|... - gi\|47097262\|ref\|ZP_00234822.1\| cysteine synthase A [Listeria monocytogenes str. 1/2a F6854], gi\|4701... gi\|255027172 - gi\|255027172\|ref\|ZP_05299158.1\| hypothetical protein LmonocytFSL_14068 [Listeria monocytogenes FSL J... gi\|255016766 - gi\|255016766\|ref\|ZP_05288892.1\| hypothetical protein LmonF_00936 [Listeria monocytogenes FSL F2-515]	5.0E-38	[4..127]	[9..130]
gi\|16799332 - gi\|16799332\|ref\|NP_469600.1\| hypothetical protein lin0255 [Listeria innocua Clip11262] gi\|16412684, gi\|... - pir\|\|AH1464 cysteine synthase (EC 4.2.99.8) [similarity] - Listeria innocua (strain Clip11262), gi\|1...	6.0E-38	[4..127]	[9..130]
gi\|15612651, gi\|... - gi\|15612651\|ref\|NP_240954.1\| cysteine synthase A [Bacillus halodurans C-125], gi\|10172700\|dbj\|BAB038... gi\|25291783 - pir\|\|H83660 cysteine synthase (EC 4.2.99.8) [similarity] - Bacillus halodurans (strain C-125)	9.0E-38	[4..126]	[9..131]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-37	[6..124]	[81..201]
CBS_RAT - Cystathionine beta-synthase OS=Rattus norvegicus GN=Cbs PE=1 SV=3	1.0E-37	[6..124]	[81..201]

Back

Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMTYYEKTP LIRQFLNNGK TNSWFYVKHE MLQPGGSFKS RGIGHLIRKS NEEALSEGSG  60
   61 KLAVFSSSGG NAGLAAATAC RSMALNCSVV VPKTTKPRMV KKIQSAGAKV IIHGDHWGEA 120
  121 DEYLRHE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	88.274545
Match:	1tdj__
Description:	Allosteric threonine deaminase N-terminal domain; Allosteric threonine deaminase C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits