YRC Public Data Repository - Protein Structure Prediction

Protein:	YIL165C
Organism:	Saccharomyces cerevisiae
Length:	119 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YIL165C.

Description	E-value	Query Range	Subject Range
gi\|1469912, gi\|2... - pir\|\|T52262 nitrilase (EC 3.5.5.1) 2 [imported] - Arabidopsis thaliana, gi\|1469912\|gb\|AAB05220.1\| ni...	5.0E-29	[1..117]	[214..326]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	4.0E-28	[1..117]	[221..333]
YIL165C - Putative protein of unknown function; in closely related species and other S. cerevisiae strain back... YIQ5_YEAST - Putative nitrilase-like protein YIL165C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=...	6.0E-28	[1..119]	[1..119]
gi\|25290269 - pir\|\|T52266 nitrilase-like protein [imported] - rice gi\|4835588 - gi\|4835588\|dbj\|BAA77679.1\| nitrilase-like protein [Oryza sativa Japonica Group]	9.0E-28	[1..118]	[231..344]
gi\|14211396 - gi\|14211396\|gb\|AAK57436.1\| nitrilase-like protein [Brassica napus]	6.0E-27	[1..117]	[222..334]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNIAYEGRL FLISAVQFMP DATAMGFGEI IDQATGKRKL PGWPSADDNC INGGSVIIDP  60
   61 YGEIIAGPLL GQEGLLTAEI NTDLIAEARF DLDPVGHYAR GDVFQLTVNE RSHDVKFTK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.917458
Match:	1emsA_
Description:	NIT-FHIT fusion protein, C-terminal domain; NIT-FHIT fusion protein, N-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits