YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: RRD1
Organism: Saccharomyces cerevisiae
Length: 393 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRD1.

Description E-value Query
Range
Subject
Range
PTPA1_YEAST - Serine/threonine-protein phosphatase 2A activator 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 ...
RRD1 - Peptidyl-prolyl cis/trans-isomerase, activator of the phosphotyrosyl phosphatase activity of PP2A; i...
gi|151943013 - gi|151943013|gb|EDN61348.1| resistant to rapamycin deletion [Saccharomyces cerevisiae YJM789]
0.0 [1..393] [1..393]
PTPA_RABIT - Serine/threonine-protein phosphatase 2A activator OS=Oryctolagus cuniculus GN=PPP2R4 PE=1 SV=1
0.0 [9..320] [17..323]
gi|974837 - gi|974837|emb|CAA60163.1| phosphotyrosyl phosphatase activator [Homo sapiens]
0.0 [9..320] [17..322]
PTPA_MOUSE - Serine/threonine-protein phosphatase 2A activator OS=Mus musculus GN=Ppp2r4 PE=1 SV=1
0.0 [9..320] [17..323]
gi|14532730, gi|... - gi|18413175|ref|NP_567342.1| phosphotyrosyl phosphatase activator (PTPA) family protein [Arabidopsis...
0.0 [9..308] [92..385]
CE27321 - status:Confirmed UniProt:Q9BL35 protein_id:AAK29984.1
0.0 [17..367] [13..340]

Back

Predicted Domain #1
Region A:
Residues: [1-337]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLDRVDWPH ATFSTPVKRI FDTQTTLDFQ SSLAIHRIKY HLHKYTTLIS HCSDPDPHAT  60
   61 ASSIAMVNGL MGVLDKLAHL IDETPPLPGP RRYGNLACRE WHHKLDERLP QWLQEMLPSE 120
  121 YHEVVPELQY YLGNSFGSST RLDYGTGHEL SFMATVAALD MLGMFPHMRG ADVFLLFNKY 180
  181 YTIMRRLILT YTLEPAGSHG VWGLDDHFHL VYILGSSQWQ LLDAQAPLQP REILDKSLVR 240
  241 EYKDTNFYCQ GINFINEVKM GPFEEHSPIL YDIAVTVPRW SKVCKGLLKM YSVEVLKKFP 300
  301 VVQHFWFGTG FFPWVNIQNG TDLPVFEEKE EESIEQA

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 209.508638
Match: PF03095
Description: Phosphotyrosyl phosphate activator (PTPA) protein

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term Confidence Notes
binding 1.8791829282582 bayes_pls_golite062009
enzyme regulator activity 1.7601888817048 bayes_pls_golite062009
phosphatase regulator activity 1.33200954243368 bayes_pls_golite062009
protein phosphatase regulator activity 1.2842291535489 bayes_pls_golite062009
enzyme activator activity 0.877491580866805 bayes_pls_golite062009
phosphatase activator activity 0.566631939970268 bayes_pls_golite062009
protein binding 0.492511638812294 bayes_pls_golite062009
catalytic activity 0.262417313750414 bayes_pls_golite062009
protein phosphatase type 2A regulator activity 0.132873007056084 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [338-393]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NAGSPGREQT STRFPTSTSM PPPGVPPSGN NINYLLSHQN QSHRNQTSFS RDRLRR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle