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View Structure Prediction Details

Protein: RPL40B, RPL40A
Organism: Saccharomyces cerevisiae
Length: 128 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL40B, RPL40A.

Description E-value Query
Range
Subject
Range
gi|13569612 - gi|13569612|gb|AAK31162.1| ubiquitin A-52 residue ribosomal protein fusion product 1 [Homo sapiens]
1.0E-57 [1..128] [14..141]
gi|194117886, gi... - gi|195160144|ref|XP_002020936.1| GL13989 [Drosophila persimilis], gi|194117886|gb|EDW39929.1| GL1398...
gi|195114034, gi... - gi|195114034|ref|XP_002001572.1| GI16482 [Drosophila mojavensis], gi|193912147|gb|EDW11014.1| GI1648...
gi|125986696|ref... - GA15543-PA [Drosophila pseudoobscura], GA15543 [Drosophila pseudoobscura pseudoobscura]
gi|195437464, gi... - gi|195437464|ref|XP_002066660.1| GK24609 [Drosophila willistoni], gi|194162745|gb|EDW77646.1| GK2460...
gi|195401058, gi... - gi|195401058|ref|XP_002059131.1| GJ16220 [Drosophila virilis], gi|194156005|gb|EDW71189.1| GJ16220 [...
gi|208657505 - gi|208657505|gb|ACI30049.1| ubiquitin/60S ribosomal protein L40 fusion [Anopheles darlingi]
gi|16074119 - gi|16074119|emb|CAC94469.1| anopheles stephensi ubiquitin [Anopheles stephensi]
gi|114864908 - gi|114864908|gb|ABI83782.1| ubiquitin [Anopheles funestus]
gi|194201766, gi... - gi|195550845|ref|XP_002076117.1| GD12014 [Drosophila simulans], gi|194201766|gb|EDX15342.1| GD12014 ...
gi|157113624, gi... - gi|16118870|gb|AAL14636.1|AF418984_1 ubiquitin-52-amino-acid fusion protein [Aedes aegypti], gi|1571...
gi|125986696, gi... - gi|54645438|gb|EAL34177.1| GA15543 [Drosophila pseudoobscura pseudoobscura], gi|125986696|ref|XP_001...
gi|220947932, gi... - gi|220957162|gb|ACL91124.1| RpL40-PA [synthetic construct], gi|220947932|gb|ACL86509.1| RpL40-PA [sy...
gi|55237763, gi|... - gi|58390190|ref|XP_317555.2| AGAP007927-PA [Anopheles gambiae str. PEST], gi|55237763|gb|EAA12215.2|...
gi|38047797, gi|... - gi|38048585|gb|AAR10195.1| similar to Drosophila melanogaster RpL40 [Drosophila yakuba], gi|38047797...
gi|190615295, gi... - gi|194758697|ref|XP_001961598.1| GF15052 [Drosophila ananassae], gi|190615295|gb|EDV30819.1| GF15052...
gi|170032305, gi... - gi|170032305|ref|XP_001844022.1| anopheles stephensi ubiquitin [Culex quinquefasciatus], gi|16787230...
AGAP007927-PA - RpL40: 60S ribosomal protein L40|protein_coding|3R:2920433:2920903:1|gene:AGAP007927
gi|195035911, gi... - gi|195035911|ref|XP_001989415.1| GH10063 [Drosophila grimshawi], gi|193905415|gb|EDW04282.1| GH10063...
gi|194855956, gi... - gi|194855956|ref|XP_001968650.1| GG24988 [Drosophila erecta], gi|190660517|gb|EDV57709.1| GG24988 [D...
RpL40-PA, FBpp03... - The gene Ribosomal protein L40 is referred to in FlyBase by the symbol Dmel\RpL40 (CG2960, FBgn00039...
gi|56417572 - gi|56417572|gb|AAV90727.1| 60S ribosomal protein L40 [Aedes albopictus]
1.0E-56 [1..128] [1..128]
gi|185134441, gi... - gi|6633991|dbj|BAA88568.1| ubiquitin [Oncorhynchus mykiss], gi|185134441|ref|NP_001117666.1| ubiquit...
gi|197632607, gi... - gi|223672341|gb|ACN12352.1| Ubiquitin [Salmo salar], gi|223646494|gb|ACN10005.1| Ubiquitin [Salmo sa...
gi|113707410 - gi|113707410|gb|ABI36601.1| ubiquitin/ribosomal protein L40 fusion protein [Bufo gargarizans]
2.0E-56 [1..128] [1..128]
gi|15187109 - gi|15187109|gb|AAK91296.1|AF395864_1 ubiquitin [Branchiostoma belcheri]
2.0E-56 [1..128] [1..128]
gi|15213800 - gi|15213800|gb|AAK92175.1|AF400203_1 ribosomal protein L40 [Spodoptera frugiperda]
4.0E-56 [1..128] [1..128]
gi|80751117, gi|... - gi|80751117|ref|NP_001030325.1| hypothetical protein LOC612529 [Canis lupus familiaris], gi|5441519|...
6.0E-56 [1..128] [1..128]
gi|47604954, gi|... - gi|47604954|ref|NP_990406.1| ubiquitin and ribosomal protein L40 [Gallus gallus], gi|2558539|emb|CAA...
6.0E-56 [1..128] [1..128]
gi|567767 - gi|567767|gb|AAA53067.1| p125 protein
7.0E-56 [1..128] [423..551]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
7.0E-56 [1..128] [1..128]

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Predicted Domain #1
Region A:
Residues: [1-76]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIFVKTLTG KTITLEVESS DTIDNVKSKI QDKEGIPPDQ QRLIFAGKQL EDGRTLSDYN  60
   61 IQKESTLHLV LRLRGG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 370.68867
Match: 1aarA_
Description: Ubiquitin
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [77-128]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IIEPSLKALA SKYNCDKSVC RKCYARLPPR ATNCRKRKCG HTNQLRPKKK LK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 33.026872
Match: PF01020
Description: Ribosomal L40e family

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle