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View Structure Prediction Details

Protein: AXL2
Organism: Saccharomyces cerevisiae
Length: 823 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AXL2.

Description E-value Query
Range
Subject
Range
AXL2_YEAST - Axial budding pattern protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AXL2 PE=...
AXL2 - Integral plasma membrane protein required for axial budding in haploid cells, localizes to the incip...
0.0 [1..823] [1..823]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
4.0E-96 [40..403] [555..928]
gi|168748664, gi... - gi|188016857|gb|EDU54979.1| intimin type gamma [Escherichia coli O157:H7 str. EC4113], gi|168748664|...
gi|189359027, gi... - gi|189359027|gb|EDU77446.1| intimin type gamma [Escherichia coli O157:H7 str. EC4401], gi|168753509|...
gi|168759806, gi... - gi|189369837|gb|EDU88253.1| intimin type gamma [Escherichia coli O157:H7 str. EC4501], gi|168759806|...
gi|168766106, gi... - gi|189364708|gb|EDU83127.1| intimin type gamma [Escherichia coli O157:H7 str. EC4486], gi|168766106|...
EAE_ECO57 - Intimin OS=Escherichia coli O157:H7 GN=eae PE=1 SV=2
gi|254595034, gi... - gi|254795634|ref|YP_003080471.1| intimin adherence protein [Escherichia coli O157:H7 str. TW14359], ...
gi|209160335, gi... - gi|209398935|ref|YP_002273158.1| intimin C-type lectin domain protein [Escherichia coli O157:H7 str....
gi|217321108, gi... - gi|217324887|ref|ZP_03440971.1| intimin C-type lectin domain protein [Escherichia coli O157:H7 str. ...
gi|15833813, gi|... - gi|15833813|ref|NP_312586.1| gamma intimin [Escherichia coli O157:H7 str. Sakai], gi|13364034|dbj|BA...
gi|195936243 - gi|195936243|ref|ZP_03081625.1| gamma intimin [Escherichia coli O157:H7 str. EC4024]
gi|208728776, gi... - gi|208808975|ref|ZP_03251312.1| intimin C-type lectin domain protein [Escherichia coli O157:H7 str. ...
gi|3414893, gi|2... - gi|3941710|gb|AAD05499.1| gamma intimin [Escherichia coli], gi|3941708|gb|AAD05498.1| gamma intimin ...
gi|208812205, gi... - gi|208812205|ref|ZP_03253534.1| intimin C-type lectin domain protein [Escherichia coli O157:H7 str. ...
gi|208819537, gi... - gi|208819537|ref|ZP_03259857.1| intimin C-type lectin domain protein [Escherichia coli O157:H7 str. ...
gi|168772345, gi... - gi|187771500|gb|EDU35344.1| intimin type gamma [Escherichia coli O157:H7 str. EC4196], gi|168772345|...
gi|12518447, gi|... - gi|15804220|ref|NP_290259.1| intimin adherence protein [Escherichia coli O157:H7 EDL933], gi|1251844...
gi|189002675, gi... - gi|189002675|gb|EDU71661.1| intimin type gamma [Escherichia coli O157:H7 str. EC4076], gi|168779841|...
gi|168785574, gi... - gi|189374618|gb|EDU93034.1| intimin type gamma [Escherichia coli O157:H7 str. EC869], gi|168785574|r...
gi|189378723, gi... - gi|189378723|gb|EDU97139.1| intimin type gamma [Escherichia coli O157:H7 str. EC508], gi|168798655|r...
1.0E-95 [40..403] [555..927]
gi|168748664, gi... - gi|188016857|gb|EDU54979.1| intimin type gamma [Escherichia coli O157:H7 str. EC4113], gi|168748664|...
gi|189359027, gi... - gi|189359027|gb|EDU77446.1| intimin type gamma [Escherichia coli O157:H7 str. EC4401], gi|168753509|...
gi|168759806, gi... - gi|189369837|gb|EDU88253.1| intimin type gamma [Escherichia coli O157:H7 str. EC4501], gi|168759806|...
gi|168766106, gi... - gi|189364708|gb|EDU83127.1| intimin type gamma [Escherichia coli O157:H7 str. EC4486], gi|168766106|...
EAE_ECO57 - Intimin OS=Escherichia coli O157:H7 GN=eae PE=1 SV=2
gi|254595034, gi... - gi|254795634|ref|YP_003080471.1| intimin adherence protein [Escherichia coli O157:H7 str. TW14359], ...
gi|209160335, gi... - gi|209398935|ref|YP_002273158.1| intimin C-type lectin domain protein [Escherichia coli O157:H7 str....
gi|217321108, gi... - gi|217324887|ref|ZP_03440971.1| intimin C-type lectin domain protein [Escherichia coli O157:H7 str. ...
gi|15833813, gi|... - gi|15833813|ref|NP_312586.1| gamma intimin [Escherichia coli O157:H7 str. Sakai], gi|13364034|dbj|BA...
gi|195936243 - gi|195936243|ref|ZP_03081625.1| gamma intimin [Escherichia coli O157:H7 str. EC4024]
gi|208728776, gi... - gi|208808975|ref|ZP_03251312.1| intimin C-type lectin domain protein [Escherichia coli O157:H7 str. ...
gi|3414893, gi|2... - gi|3941710|gb|AAD05499.1| gamma intimin [Escherichia coli], gi|3941708|gb|AAD05498.1| gamma intimin ...
gi|208812205, gi... - gi|208812205|ref|ZP_03253534.1| intimin C-type lectin domain protein [Escherichia coli O157:H7 str. ...
gi|208819537, gi... - gi|208819537|ref|ZP_03259857.1| intimin C-type lectin domain protein [Escherichia coli O157:H7 str. ...
gi|168772345, gi... - gi|187771500|gb|EDU35344.1| intimin type gamma [Escherichia coli O157:H7 str. EC4196], gi|168772345|...
gi|12518447, gi|... - gi|15804220|ref|NP_290259.1| intimin adherence protein [Escherichia coli O157:H7 EDL933], gi|1251844...
gi|189002675, gi... - gi|189002675|gb|EDU71661.1| intimin type gamma [Escherichia coli O157:H7 str. EC4076], gi|168779841|...
gi|168785574, gi... - gi|189374618|gb|EDU93034.1| intimin type gamma [Escherichia coli O157:H7 str. EC869], gi|168785574|r...
gi|189378723, gi... - gi|189378723|gb|EDU97139.1| intimin type gamma [Escherichia coli O157:H7 str. EC508], gi|168798655|r...
4.0E-95 [40..403] [555..927]
gi|3941712 - gi|3941712|gb|AAD05500.1| gamma intimin [Escherichia coli]
gi|168983571, gi... - gi|168983573|dbj|BAG11665.1| intimin gamma [Escherichia coli O55:H7], gi|168983571|dbj|BAG11664.1| i...
2.0E-91 [40..403] [555..927]
EAE_ECO11 - Intimin OS=Escherichia coli O111:H- GN=eae PE=3 SV=1
gi|2565325 - gi|2565325|gb|AAC69247.1| intimin [Escherichia coli]
4.0E-89 [40..403] [555..928]

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Predicted Domain #1
Region A:
Residues: [1-148]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQLQISLLL TATISLLHLV VATPYEAYPI GKQYPPVARV NESFTFQISN DTYKSSVDKT  60
   61 AQITYNCFDL PSWLSFDSSS RTFSGEPSSD LLSDANTTLY FNVILEGTDS ADSTSLNNTY 120
  121 QFVVTNRPSI SLSSDFNLLA LLKNYGYT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 2.154902
Match: 1cwvA_
Description: Invasin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.95444025761215 bayes_pls_golite062009
protein binding 1.27159851877663 bayes_pls_golite062009
receptor activity 1.06696607894653 bayes_pls_golite062009
cell adhesion molecule binding 0.537960312630809 bayes_pls_golite062009
transmembrane receptor activity 0.296113784946944 bayes_pls_golite062009
transcription regulator activity 0.185231656572514 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [149-242]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGKNALKLDP NEVFNVTFDR SMFTNEESIV SYYGRSQLYN APLPNWLFFD SGELKFTGTA  60
   61 PVINSAIAPE TSYSFVIIAT DIEGFSAVEV EFEL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.69897
Match: 1f00I_
Description: Intimin
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [243-326]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VIGAHQLTTS IQNSLIINVT DTGNVSYDLP LNYVYLDDDP ISSDKLGSIN LLDAPDWVAL  60
   61 DNATISGSVP DELLGKNSNP ANFS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.69897
Match: 1f00I_
Description: Intimin
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [327-442]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSIYDTYGDV IYFNFEVVST TDLFAISSLP NINATRGEWF SYYFLPSQFT DYVNTNVSLE  60
   61 FTNSSQDHDW VKFQSSNLTL AGEVPKNFDK LSLGLKANQG SQSQELYFNI IGMDSK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.69897
Match: 1f00I_
Description: Intimin
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [443-823]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ITHSNHSANA TSTRSSHHST STSSYTSSTY TAKISSTSAA ATSSAPAALP AANKTSSHNK  60
   61 KAVAIACGVA IPLGVILVAL ICFLIFWRRR RENPDDENLP HAISGPDLNN PANKPNQENA 120
  121 TPLNNPFDDD ASSYDDTSIA RRLAALNTLK LDNHSATESD ISSVDEKRDS LSGMNTYNDQ 180
  181 FQSQSKEELL AKPPVQPPES PFFDPQNRSS SVYMDSEPAV NKSWRYTGNL SPVSDIVRDS 240
  241 YGSQKTVDTE KLFDLEAPEK EKRTSRDVTM SSLDPWNSNI SPSPVRKSVT PSPYNVTKHR 300
  301 NRHLQNIQDS QSGKNGITPT TMSTSSSDDF VPVKDGENFC WVHSMEPDRR PSKKRLVDFS 360
  361 NKSNVNVGQV KDIHGRIPEM L

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle