| Protein: | KGD1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1014 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KGD1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [6..1011] | [58..1077] |
|
|
0.0 | [1..1014] | [1..1014] |
|
|
0.0 | [31..1011] | [1..930] |
|
|
0.0 | [38..1011] | [34..1012] |
|
|
0.0 | [31..1011] | [1..930] |
|
|
0.0 | [3..1012] | [17..1016] |
|
|
0.0 | [1..1011] | [1..1008] |
|
|
0.0 | [21..1011] | [13..1014] |
|
|
0.0 | [31..1011] | [1..930] |
|
|
0.0 | [2..1011] | [4..1014] |
|
Region A: Residues: [1-148] |
1 11 21 31 41 51
| | | | | |
1 MLRFVSSQTC RYSSRGLLKT SLLKNASTVK IVGRGLATTG TDNFLSTSNA TYIDEMYQAW 60
61 QKDPSSVHVS WDAYFKNMSN PKIPATKAFQ APPSISNFPQ GTEAAPLGTA MTGSVDENVS 120
121 IHLKVQLLCR AYQVRGHLKA HIDPLGIS
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.261 | N/A | N/A | c.51.2 | TolB, N-terminal domain |
|
Region A: Residues: [149-275] |
1 11 21 31 41 51
| | | | | |
1 FGSNKNNPVP PELTLDYYGF SKHDLDKEIN LGPGILPRFA RDGKSKMSLK EIVDHLEKLY 60
61 CSSYGVQYTH IPSKQKCDWL RERIEIPEPY QYTVDQKRQI LDRLTWATSF ESFLSTKFPN 120
121 DKRFGLE
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.234 | 0.326 | mitochondrial nucleoid | a.39.1 | EF-hand |
| View | Download | 0.272 | 0.099 | mitochondrial nucleoid | c.23.1 | CheY-like |
| View | Download | 0.237 | 0.030 | mitochondrial nucleoid | a.118.9 | ENTH/VHS domain |
| View | Download | 0.529 | 0.030 | mitochondrial nucleoid | c.23.6 | Cobalamin (vitamin B12)-binding domain |
| View | Download | 0.376 | 0.016 | mitochondrial nucleoid | a.69.1 | C-terminal domain of alpha and beta subunits of F1 ATP synthase |
| View | Download | 0.231 | N/A | N/A | c.1.2 | Ribulose-phoshate binding barrel |
| View | Download | 0.228 | N/A | N/A | a.41.1 | Domain of poly(ADP-ribose) polymerase |
| View | Download | 0.223 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.203 | N/A | N/A | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.202 | N/A | N/A | a.118.8 | TPR-like |
|
Region A: Residues: [276-379] |
1 11 21 31 41 51
| | | | | |
1 GLESVVPGIK TLVDRSVELG VEDIVLGMAH RGRLNVLSNV VRKPNESIFS EFKGSSARDD 60
61 IEGSGDVKYH LGMNYQRPTT SGKYVNLSLV ANPSHLESQD PVVL
|
|
Region B: Residues: [397-559] |
1 11 21 31 41 51
| | | | | |
1 KALGVLLHGD AAFAGQGVVY ETMGFLTLPE YSTGGTIHVI TNNQIGFTTD PRFARSTPYP 60
61 SDLAKAIDAP IFHVNANDVE AVTFIFNLAA EWRHKFHTDA IIDVVGWRKH GHNETDQPSF 120
121 TQPLMYKKIA KQKSVIDVYT EKLISEGTFS KKDIDEHKKW VWN
|
| Detection Method: | |
| Confidence: | 70.154902 |
| Match: | 1gpuA_ |
| Description: | Transketolase (TK), Pyr module; Transketolase (TK), PP module; Transketolase (TK), C-domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [380-396] |
1 11 21 31 41 51
| | | | | |
1 GRTRALLHAK NDLKEKT
|
|
Region B: Residues: [560-598] |
1 11 21 31 41 51
| | | | | |
1 LFEDAFEKAK DYVPSQREWL TAAWEGFKSP KELATEILP
|
| Detection Method: | |
| Confidence: | 70.154902 |
| Match: | 1gpuA_ |
| Description: | Transketolase (TK), Pyr module; Transketolase (TK), PP module; Transketolase (TK), C-domain |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [599-702] |
1 11 21 31 41 51
| | | | | |
1 HEPTNVPEST LKELGKVLSS WPEGFEVHKN LKRILKNRGK SIETGEGIDW ATGEALAFGT 60
61 LVLDGQNVRV SGEDVERGTF SQRHAVLHDQ QSEAIYTPLS TLNN
|
| Detection Method: | |
| Confidence: | 70.154902 |
| Match: | 1gpuA_ |
| Description: | Transketolase (TK), Pyr module; Transketolase (TK), PP module; Transketolase (TK), C-domain |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [703-881] |
1 11 21 31 41 51
| | | | | |
1 EKADFTIANS SLSEYGVMGF EYGYSLTSPD YLVMWEAQFG DFANTAQVII DQFIAGGEQK 60
61 WKQRSGLVLS LPHGYDGQGP EHSSGRLERF LQLANEDPRY FPSEEKLQRQ HQDCNFQVVY 120
121 PTTPANLFHI LRRQQHRQFR KPLALFFSKQ LLRHPLARSS LSEFTEGGFQ WIIEDIEHG
|
| Detection Method: | |
| Confidence: | 75.0 |
| Match: | 1ik6A_ |
| Description: | E1-beta subunit of pyruvate dehydrogenase, Pyr module; E1-beta subunit of pyruvate dehydrogenase, C-domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [882-1014] |
1 11 21 31 41 51
| | | | | |
1 KSIGTKEETK RLVLLSGQVY TALHKRRESL GDKTTAFLKI EQLHPFPFAQ LRDSLNSYPN 60
61 LEEIVWCQEE PLNMGSWAYT EPRLHTTLKE TDKYKDFKVR YCGRNPSGAV AAGSKSLHLA 120
121 EEDAFLKDVF QQS
|
| Detection Method: | |
| Confidence: | 75.0 |
| Match: | 1ik6A_ |
| Description: | E1-beta subunit of pyruvate dehydrogenase, Pyr module; E1-beta subunit of pyruvate dehydrogenase, C-domain |
| Matching Structure (courtesy of the PDB): |
|
