| Protein: | SIM1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 475 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SIM1.
| Description | E-value | Query Range |
Subject Range |
|
|
385.0 | [0..1] | [475..1] |
|
|
356.0 | [0..206] | [474..47] |
|
|
354.0 | [0..202] | [474..155] |
|
|
348.0 | [0..3] | [474..9] |
|
|
333.0 | [0..206] | [475..145] |
|
Region A: Residues: [1-199] |
1 11 21 31 41 51
| | | | | |
1 MKFSTAVTTL ISSGAIVSAL PHVDVHQEDA HQHKRAVAYK YVYETVVVDS DGHTVTPAAS 60
61 EVATAATSAI ITTSVLAPTS SAAAGIAASI AVSSAALAKN EKISDAAASA TASTSQGASS 120
121 SSSSSSATST LESSSVSSSS EEAAPTSTVV STSSATQSSA SSATKSSTSS TSPSTSTSTS 180
181 TSSTSSSSSS SSSSSSSSS
|
| Detection Method: |  |
| Confidence: | 13.03 |
| Match: | |
| Description: | No description for 1m2vB was found. |
|
Region A: Residues: [200-339] |
1 11 21 31 41 51
| | | | | |
1 GSGSIYGDLA DFSGPSEKFQ DGTIPCDKFP SGQGVISIDW IGEGGWSGVE NTDTSTGGSC 60
61 KEGSYCSYSC QPGMSKTQWP SDQPSDGRSV GGLLCKNGYL YRSNTDADYL CEWGVEAAYV 120
121 VSKLSKGVAI CRTDYPGTEN
|
| Detection Method: | |
| Confidence: | 2.09691 |
| Match: | 1deqA |
| Description: | Fibrinogen |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [340-475] |
1 11 21 31 41 51
| | | | | |
1 MVIPTYVEGG SSLPLTVVDQ DTYFTWEGKK TSAQYYVNNA GVSVEDGCIW GTSGSGIGNW 60
61 APLNFGAGST GGVTYLSLIP NPNNSDALNY NVKIVAADDS SNVIGECVYE NGEFSGGADG 120
121 CTVSVTSGKA HFVLYN
|
| Detection Method: | |
| Confidence: | 39.79588 |
| Match: | PF03856 |
| Description: | Beta-glucosidase (SUN family) |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.292 | N/A | N/A | d.129.3 | Bet v1-like |
| View | Download | 0.276 | N/A | N/A | d.38.1 | Thioesterase/thiol ester dehydrase-isomerase |
| View | Download | 0.261 | N/A | N/A | c.55.1 | Actin-like ATPase domain |
| View | Download | 0.253 | N/A | N/A | b.60.1 | Lipocalins |
| View | Download | 0.249 | N/A | N/A | b.60.1 | Lipocalins |
| View | Download | 0.248 | N/A | N/A | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.234 | N/A | N/A | b.1.1 | Immunoglobulin |
| View | Download | 0.210 | N/A | N/A | b.60.1 | Lipocalins |
| View | Download | 0.208 | N/A | N/A | b.61.1 | Avidin/streptavidin |
| View | Download | 0.203 | N/A | N/A | b.18.1 | Galactose-binding domain-like |
