YRC Public Data Repository - Protein Structure Prediction

Protein:	MAM33
Organism:	Saccharomyces cerevisiae
Length:	266 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MAM33.

Description	E-value	Query Range	Subject Range
gi\|126540523, gi... - gi\|56237886\|emb\|CAI26064.1\| complement component 1, q subcomponent binding protein [Mus musculus], g...	1.0E-73	[3..265]	[32..276]
gi\|190406286 - gi\|190406286\|gb\|EDV09553.1\| mitochondrial acidic protein MAM33 [Saccharomyces cerevisiae RM11-1a] MAM33_YEAST - Mitochondrial acidic protein MAM33 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAM33... MAM33 - Acidic protein of the mitochondrial matrix involved in oxidative phosphorylation; related to the hum...	4.0E-72	[1..266]	[1..266]
gi\|447739 - gi\|447739\|prf\|\|1915304A nylB upstream ORF	2.0E-69	[9..265]	[36..276]
gi\|61358698, gi\|... - gi\|61358698\|gb\|AAX41609.1\| complement component 1 q subcomponent binding protein [synthetic construc... C1QBP - complement component 1, q subcomponent binding protein	9.0E-68	[3..265]	[32..279]
gi\|8248258 - gi\|8248258\|gb\|AAF74122.1\|AF238300_1 mitochondrial matrix protein p32 [Cercopithecus aethiops]	8.0E-66	[3..265]	[32..279]
Y2979_ARATH - Uncharacterized protein At2g39790, mitochondrial OS=Arabidopsis thaliana GN=At2g39790 PE=3 SV=2	2.0E-61	[3..264]	[202..426]

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Predicted Domain #1

Region A:
Residues: [1-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLRSVNRAV TRSILTTPKP AVVKSSWRVF TVANSKRCFT PAAIMRNQET QRVGDILQSE  60
   61 LKIEKETLPE STSLDSFNDF LNKYKFSLVE TPGKNEAEIV RRTESGETVH VFFDVAQIAN 120
  121 LPYNNAMDEN TEQNEDGINE DDFDALSDNF ANVNVVISKE SASEPAVSFE LLMNLQEGSF 180
  181 YVDSATPYPS VDAALNQSAE AEITRELVYH GPPFSNLDEE LQESLEAYLE SRGVNEELAS 240
  241 FISAYSEFKE NNEYISWLEK MKKFFH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.522879
Match:	1p32A_
Description:	Acidic mitochondrial matrix protein p32
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits