| Protein: | SEC6 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 805 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SEC6.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..805] | [1..805] |
|
|
0.0 | [6..771] | [10..746] |
|
|
0.0 | [6..774] | [23..727] |
|
|
0.0 | [8..770] | [13..698] |
|
|
0.0 | [107..774] | [1..620] |
|
|
0.0 | [6..775] | [14..716] |
|
|
0.0 | [6..774] | [5..671] |
|
Region A: Residues: [1-285] |
1 11 21 31 41 51
| | | | | |
1 MSSDPLQQVC DLIKGDLSLE RVRDIKEQLL KEKSVVEYQL NKESDKYYGE VEESLKLLNL 60
61 SKNSVTSIKQ QINEVNKLGN DNRFAINRYD ILFRATKLYE TVNTTSSIYD RIYNFVALME 120
121 HIERLLVAEL AEDALETGCP HLLEIHFLLT SARDFQEQVV VMAKEATEDA QRTVMKLFSR 180
181 LSGIISKFDK LLDGLTYDIV EMARAEQISL AIRLFKIYDL EEREDLRIEA IRNIIKKKEI 240
241 EIEKSSIKKL PNSKNTARLQ DETPKVIEYP TNKGLYQEIM SGTIS
|
| Detection Method: |  |
| Confidence: | 12.48 |
| Match: | 1qgkA |
| Description: | Importin beta |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [286-425] |
1 11 21 31 41 51
| | | | | |
1 TRTAPRGYKH FLINGINNSI SEMFGEMREK YVGDQKFDVL DNMDWIFNEL IIVKEHIANC 60
61 CPPHWNIFEV YFDQYYKELH SLITDLVESE PETIIILDIL AFDKTFQDTL KQDFGFTKSE 120
121 VKSVIGDKEK ETLFKDYLNL
|
| Detection Method: | |
| Confidence: | 12.48 |
| Match: | 1qgkA |
| Description: | Importin beta |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [426-546] |
1 11 21 31 41 51
| | | | | |
1 IVVKMTEWIG NLEKAEFDVF LERSTPPHSD SDGLLFLDGT KTCFQMFTQQ VEVAAGTNQA 60
61 KILVGVVERF SDLLTKRQKN WISKISEEIK KQINYNHKYD IDPESITPED ECPGGLVEYL 120
121 I
|
| Detection Method: | |
| Confidence: | 12.48 |
| Match: | 1qgkA |
| Description: | Importin beta |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [547-805] |
1 11 21 31 41 51
| | | | | |
1 AVSNDQMKAA DYAVAISSKY GKLVSKVYEK QITNHLEGTL DGFAEVAQCS SLGLITLMFD 60
61 DLRKPYQEIF SKTWYMGSQA QQIADTLDEY LLDIKPQMNS VLFVNFIDNV IGETIIKFLT 120
121 ALSFEHSFKN KNNKFLEAMK RDFEIFYQLF VKVLDGNESK DTLITQNFTV MEFFMDLSCE 180
181 PIDSILDIWQ KYLEVYWDSR IDLLVGILKC RKDVSSSERK KIVQQATEML HEYRRNMEAN 240
241 GVDREPTLMR RFVLEFEKQ
|
| Detection Method: | |
| Confidence: | 12.48 |
| Match: | 1qgkA |
| Description: | Importin beta |
| Matching Structure (courtesy of the PDB): |
|
