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View Structure Prediction Details

Protein: FAF1
Organism: Saccharomyces cerevisiae
Length: 346 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FAF1.

Description E-value Query
Range
Subject
Range
gi|190406241 - gi|190406241|gb|EDV09508.1| protein FAF1 [Saccharomyces cerevisiae RM11-1a]
gi|207344278 - gi|207344278|gb|EDZ71476.1| YIL019Wp-like protein [Saccharomyces cerevisiae AWRI1631]
FAF1_YEAST - Protein FAF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FAF1 PE=1 SV=1
FAF1 - Protein required for pre-rRNA processing and 40S ribosomal subunit assembly
0.0 [1..346] [1..346]
YAW8_SCHPO - Uncharacterized protein C3F10.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3F10...
SPAC3F10.08c - rRNA processing protein Faf1
2.0E-65 [12..274] [7..232]

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Predicted Domain #1
Region A:
Residues: [1-346]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLDDDDYIK QMELQRKAFE SQFGSLESMG FEDKTKNIRT EVDTRDSSGD EIDNSDHGSD  60
   61 FKDGTIESSN SSDEDSGNET AEENNQDSKP KTQPKVIRFN GPSDVYVPPS KKTQKLLRSG 120
  121 KTLTQINKKL ESTEAKEEKE DETLEAENLQ NDLELQQFLR ESHLLSAFNN GGSGSTNSGV 180
  181 SLTLQSMGGG NDDGIVYQDD QVIGKARSRT LEMRLNRLSR VNGHQDKINK LEKVPMHIRR 240
  241 GMIDKHVKRI KKYEQEAAEG GIVLSKVKKG QFRKIESTYK KDIERRIGGS IKARDKEKAT 300
  301 KRERGLKISS VGRSTRNGLI VSKRDIARIS GGERSGKFNG KKKSRR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle