YRC Public Data Repository - Protein Structure Prediction

Protein:	CFD1
Organism:	Saccharomyces cerevisiae
Length:	293 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CFD1.

Description	E-value	Query Range	Subject Range
gi\|151943155 - gi\|151943155\|gb\|EDN61490.1\| cytosolic Fe-S cluster deficient [Saccharomyces cerevisiae YJM789] CFD1_YEAST - Cytosolic Fe-S cluster assembly factor CFD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)... CFD1 - Highly conserved, iron-sulfur cluster binding protein localized in the cytoplasm; forms a complex wi... gi\|190406226 - gi\|190406226\|gb\|EDV09493.1\| hypothetical protein SCRG_05182 [Saccharomyces cerevisiae RM11-1a] gi\|207344261 - gi\|207344261\|gb\|EDZ71465.1\| YIL003Wp-like protein [Saccharomyces cerevisiae AWRI1631]	4.0E-76	[1..293]	[1..293]
NUBP1_MOUSE - Cytosolic Fe-S cluster assembly factor NUBP1 OS=Mus musculus GN=Nubp1 PE=1 SV=1	6.0E-71	[3..273]	[40..305]
gi\|25309620 - pir\|\|AI3487 mrp protein [imported] - Brucella melitensis (strain 16M) gi\|17983930, gi\|... - gi\|17988170\|ref\|NP_540804.1\| ATPase [Brucella melitensis 16M], gi\|17983930\|gb\|AAL53068.1\| mrp protei...	1.0E-69	[3..275]	[119..378]
APBC_METJA - Iron-sulfur cluster carrier protein OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 /... Y283_METJA - Uncharacterized ATP-binding protein MJ0283 OS=Methanocaldococcus jannaschii GN=MJ0283 PE=3 SV=1	1.0E-69	[3..276]	[25..286]
gi\|13540919, gi\|... - gi\|14324301\|dbj\|BAB59229.1\| MRP/NBP35 family ATP-binding protein [Thermoplasma volcanium GSS1], gi\|1...	6.0E-67	[15..275]	[27..275]
NUBP1 - nucleotide binding protein 1 (MinD homolog, E. coli)	8.0E-67	[3..271]	[40..303]
gi\|14025258, gi\|... - gi\|14025258\|dbj\|BAB51859.1\| MRP protein (ATP/GTP-binding protein) homolog [Mesorhizobium loti MAFF30...	8.0E-67	[10..276]	[120..373]

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Predicted Domain #1

Region A:
Residues: [1-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEQEIGVPA ASLAGIKHII LILSGKGGVG KSSVTTQTAL TLCSMGFKVG VLDIDLTGPS  60
   61 LPRMFGLENE SIYQGPEGWQ PVKVETNSTG SLSVISLGFL LGDRGNSVIW RGPKKTSMIK 120
  121 QFISDVAWGE LDYLLIDTPP GTSDEHISIA EELRYSKPDG GIVVTTPQSV ATADVKKEIN 180
  181 FCKKVDLKIL GIIENMSGFV CPHCAECTNI FSSGGGKRLS EQFSVPYLGN VPIDPKFVEM 240
  241 IENQVSSKKT LVEMYRESSL CPIFEEIMKK LRKQDTTTPV VDKHEQPQIE SPK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	113.69897
Match:	1g3qA_
Description:	Cell division regulator MinD
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits