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View Structure Prediction Details

Protein: YHR217C
Organism: Saccharomyces cerevisiae
Length: 153 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHR217C.

Description E-value Query
Range
Subject
Range
ama-1 - RNA polymerase II status:Partially_confirmed UniProt:P16356 protein_id:AAA96158.2
0.002 [5..97] [1735..1821]

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Predicted Domain #1
Region A:
Residues: [1-153]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLRPCLTPS SMQYSDIYIH TPHPHPHPHP HTPTHTHPHT PTPTPHPHPH TPHPHTTPTP  60
   61 TPHHTHTPHT TLSNLSLNLP SHYPTSPLVT LPHSTIPLPT TIHLSTYYYH PPPIITVTLQ 120
  121 LPISNSTTIT LLLPYHPPCP THCTVVLPSI LKR

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 13.2
Match: 1k83A
Description: RBP1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle