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View Structure Prediction Details

Protein: RPS4B, RPS4A
Organism: Saccharomyces cerevisiae
Length: 261 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS4B, RPS4A.

Description E-value Query
Range
Subject
Range
RS4X_MACFU - 40S ribosomal protein S4, X isoform OS=Macaca fuscata fuscata GN=RPS4X PE=2 SV=3
RS4X_MESAU - 40S ribosomal protein S4, X isoform OS=Mesocricetus auratus GN=RPS4X PE=2 SV=2
RS4X_FELCA - 40S ribosomal protein S4, X isoform OS=Felis catus GN=RPS4X PE=2 SV=2
RS4X_CHLAE - 40S ribosomal protein S4, X isoform OS=Chlorocebus aethiops GN=RPS4X PE=2 SV=3
gi|6519820 - gi|6519820|dbj|BAA87932.1| ribosomal protein S4X (RPS4X) [Macaca fuscata]
gi|1083572 - gi|1083572|pir||A55276 ribosomal protein S4 - western wild mouse
gi|2148029, gi|2... - gi|220321|dbj|BAA01858.1| ribosomal protein S4 [Mesocricetus sp.], gi|2148029|pir||I48169 ribosomal ...
gi|57135 - gi|57135|emb|CAA32427.1| unnamed protein product [Rattus rattus]
gi|114689107, gi... - gi|114689107|ref|XP_001139217.1| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes], gi|114...
gi|149759012, gi... - gi|255653020|ref|NP_001157422.1| ribosomal protein S4 [Equus caballus], gi|149759012|ref|XP_00148806...
gi|123993841, gi... - gi|123996497|gb|ABM85850.1| ribosomal protein S4, X-linked [synthetic construct], gi|123993841|gb|AB...
RS4X_MOUSE - 40S ribosomal protein S4, X isoform OS=Mus musculus GN=Rps4x PE=1 SV=2
gi|109131194 - gi|109131194|ref|XP_001093393.1| PREDICTED: similar to 40S ribosomal protein S4, X isoform [Macaca m...
gi|90075468 - gi|90075468|dbj|BAE87414.1| unnamed protein product [Macaca fascicularis]
RS4X_RAT - 40S ribosomal protein S4, X isoform OS=Rattus norvegicus GN=Rps4x PE=2 SV=2
RPS4X - ribosomal protein S4, X-linked
RS4_BOVIN - 40S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=2 SV=3
ENSCJAT00000008044 - null
473.0 [0..1] [259..1]
RS4_CRIGR - 40S ribosomal protein S4 OS=Cricetulus griseus GN=RPS4 PE=2 SV=2
472.0 [0..1] [259..1]
gi|57090063 - gi|57090063|ref|XP_537399.1| PREDICTED: similar to 40S ribosomal protein S4, X isoform [Canis famili...
471.0 [0..1] [259..1]
gi|74179765 - gi|74179765|dbj|BAE22507.1| unnamed protein product [Mus musculus]
471.0 [0..1] [259..1]
RS4_CHICK - 40S ribosomal protein S4 OS=Gallus gallus GN=RPS4 PE=2 SV=2
471.0 [0..1] [259..1]
gi|227229 - gi|227229|prf||1617101C ribosomal protein S4
471.0 [0..1] [259..1]
gi|126722859, gi... - gi|61835740|ref|XP_591678.1| PREDICTED: similar to 40S ribosomal protein S4, X isoform [Bos taurus],...
470.0 [0..1] [259..1]
RS4X_MESAU - (P62704) 40S ribosomal protein S4, X isoform
RS4X_RAT - (P62703) 40S ribosomal protein S4, X isoform
RS4X_CERAE - (Q76N24) 40S ribosomal protein S4, X isoform
RS4X_FELCA - (P62705) 40S ribosomal protein S4, X isoform
RPS4X - ribosomal protein S4, X-linked
RS4X_MACFU - (Q76MY1) 40S ribosomal protein S4, X isoform
RS4X_MOUSE - (P62702) 40S ribosomal protein S4, X isoform
tr|F7DFM3|F7DFM3... - 40S ribosomal protein S4 OS=Equus caballus OX=9796 GN=RPS4X PE=3 SV=1
470.0 [0..2] [259..1]

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Predicted Domain #1
Region A:
Residues: [1-67]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARGPKKHLK RLAAPHHWLL DKLSGCYAPR PSAGPHKLRE SLPLIVFLRN RLKYALNGRE  60
   61 VKAILMQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [68-186]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RHVKVDGKVR TDTTYPAGFM DVITLDATNE NFRLVYDVKG RFAVHRITDE EASYKLGKVK  60
   61 KVQLGKKGVP YVVTHDGRTI RYPDPNIKVN DTVKIDLASG KITDFIKFDA GKLVYVTGG

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 41.60206
Match: PF00900.11
Description: No description for PF00900.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.863 N/A N/A b.61.4 Quinohemoprotein amine dehydrogenase A chain, domain 3

Predicted Domain #3
Region A:
Residues: [187-261]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RNLGRIGTIV HKERHDGGFD LVHIKDSLDN TFVTRLNNVF VIGEQGKPYI SLPKGKGIKL  60
   61 SIAEERDRRR AQQGL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle