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View Structure Prediction Details

Protein: NVJ1
Organism: Saccharomyces cerevisiae
Length: 321 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NVJ1.

Description E-value Query
Range
Subject
Range
NVJ1_YEAST - Nucleus-vacuole junction protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NVJ1 ...
NVJ1 - Nuclear envelope protein, anchored to the nuclear inner membrane, that interacts with the vacuolar m...
0.0 [1..321] [1..321]

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Predicted Domain #1
Region A:
Residues: [1-321]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRPPLVRGI FSLGLSVAVL KGVEKTVRKH LERQGWIEPQ KVDYELIFTI DRLKNLVDNK  60
   61 REALTAEQPD AGELSWRKVF NFISRQSSEL DTRIYVLILL LSFLLPIAWT VLDGDRETTL 120
  121 EDKDNDCNVD LIENERRLKH YNDGERAVLQ FGKNRSEPII LSYKDMNVLE GEHEFTSKEE 180
  181 HSNSHLTSKS ENALNQVGSE DLLGCHLEKQ LEEDKNEPNG EADGEDDNNR EKDCSSSSEV 240
  241 ESQSKCRKES TAEPDSLSRD TRTTSSLKSS TSFPISFKGS IDLKSLNQPS SLLHIQVSPT 300
  301 KSSNLDAQVN TEQAYSQPFR Y

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Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle