| Protein: | CDC23 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 626 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDC23.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-93 | [141..623] | [15..474] |
|
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4.0E-93 | [150..623] | [14..464] |
|
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5.0E-93 | [150..623] | [14..464] |
|
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4.0E-92 | [150..623] | [53..503] |
|
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3.0E-86 | [136..623] | [42..506] |
|
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2.0E-83 | [16..581] | [62..617] |
|
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6.0E-72 | [1..626] | [1..626] |
|
Region A: Residues: [1-112] |
1 11 21 31 41 51
| | | | | |
1 MNDDSQDKII HDIRIQLRKA ATELSRWKLY GSSKWAAEAL AGLAEAIDVD QTHSLADESP 60
61 LRNKQGVPKQ MFEIPQNGFG LSETEYDLYL LGSTLFDAKE FDRCVFFLKD VT
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [113-203] |
1 11 21 31 41 51
| | | | | |
1 NPYLKFLKLY SKFLSWDKKS QESMENILTT GKFTDEMYRA NKDGDGSGNE DINQSGHQRA 60
61 NLKMVSNEHE SQSNISSILK EINTFLESYE I
|
| Detection Method: | |
| Confidence: | 10.522879 |
| Match: | 1a17__ |
| Description: | Protein phosphatase 5 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [204-343] |
1 11 21 31 41 51
| | | | | |
1 KIDDDEADLG LALLYYLRGV ILKQEKNISK AMSSFLKSLS CYSFNWSCWL ELMDCLQKVD 60
61 DALLLNNYLY QNFQFKFSEN LGSQRTIEFN IMIKFFKLKV FEELNGQLED YFEDLEFLLQ 120
121 VFPNFTFLKA YNATISYNNL
|
| Detection Method: | |
| Confidence: | 34.69897 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [344-411] |
1 11 21 31 41 51
| | | | | |
1 DYVTAESRFD DIVKQDPYRL NDLETYSNIL YVMQKNSKLA YLAQFVSQID RFRPETCCII 60
61 ANYYSARQ
|
| Detection Method: | |
| Confidence: | 34.69897 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [412-497] |
1 11 21 31 41 51
| | | | | |
1 EHEKSIMYFR RALTLDKKTT NAWTLMGHEF VELSNSHAAI ECYRRAVDIC PRDFKAWFGL 60
61 GQAYALLDMH LYSLYYFQKA CTLKPW
|
| Detection Method: | |
| Confidence: | 34.69897 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [498-626] |
1 11 21 31 41 51
| | | | | |
1 DRRIWQVLGE CYSKTGNKVE AIKCYKRSIK ASQTVDQNTS IYYRLAQLYE ELEDLQECKK 60
61 FMMKCVDVEE LLEGIVTDET VKARLWLAIF EIKAGNYQLA YDYAMGVSSG TSQEIEEARM 120
121 LARECRRHM
|
| Detection Method: | |
| Confidence: | 4.69897 |
| Match: | 1jcqA_ |
| Description: | Protein farnesyltransferase alpha-subunit |
Matching Structure (courtesy of the PDB): |
|
