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View Structure Prediction Details

Protein: REC104
Organism: Saccharomyces cerevisiae
Length: 182 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for REC104.

Description E-value Query
Range
Subject
Range
RE104_SACPA - Meiotic recombination protein REC104 OS=Saccharomyces paradoxus GN=REC104 PE=2 SV=1
339.0 [0..1] [182..1]
RE104_SACPS - Meiotic recombination protein REC104 OS=Saccharomyces pastorianus GN=REC104 PE=2 SV=1
306.0 [0..1] [182..1]

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Predicted Domain #1
Region A:
Residues: [1-182]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIEEEDTNK ITCTQDFLHQ YFVTERVSIQ FGLNNKTVKR INKDEFDKAV NCIMSWTNYP  60
   61 KPGLKRTAST YLLSNSFKKS ATVSLPFILG DPVCMPKRVE SNNNDTCLLY SDTLYDDPLI 120
  121 QRNDQAGDEI EDEFSFTLLR SEVNEIRPIS SSSTAQILQS DYSALMYERQ ASNGSIFQFS 180
  181 SP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.377 c.49.2 ATP synthase (F1-ATPase), gamma subunit
View Download 0.377 a.29.3 Acyl-CoA dehydrogenase C-terminal domain-like
View Download 0.361 c.78.1 Aspartate/ornithine carbamoyltransferase
View Download 0.345 d.38.1 Thioesterase/thiol ester dehydrase-isomerase
View Download 0.342 c.69.1 alpha/beta-Hydrolases
View Download 0.335 c.10.1 RNI-like
View Download 0.327 a.131.1 Peridinin-chlorophyll protein
View Download 0.316 a.63.1 Apolipophorin-III
View Download 0.236 a.123.1 Nuclear receptor ligand-binding domain
View Download 0.231 d.90.1 NADH oxidase/flavin reductase
View Download 0.230 a.168.1 GEF domain of SopE toxin
View Download 0.218 a.126.1 Serum albumin-like
View Download 0.217 d.108.1 Acyl-CoA N-acyltransferases (Nat)


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle