YRC Public Data Repository - Protein Structure Prediction

Protein:	YHR140W
Organism:	Saccharomyces cerevisiae
Length:	239 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHR140W.

Description	E-value	Query Range	Subject Range
YHR140W - Putative integral membrane protein of unknown function gi\|190405918 - gi\|190405918\|gb\|EDV09185.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] YHU0_YEAST - UPF0641 membrane protein YHR140W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YHR140W...	0.0	[1..239]	[1..239]
gi\|19112072 - gi\|19112072\|ref\|NP_595280.1\| hypothetical protein SPBPJ4664.05 [Schizosaccharomyces pombe 972h-] SPBPJ4664.05 - conserved fungal protein	2.0E-40	[87..213]	[19..138]

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Predicted Domain #1

Region A:
Residues: [1-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSCLVPTRF TLTLNTACLL TSTWGFVRAT SVVLPPSLSK AGHKQFLTII SIIATIINNA  60
   61 VNISNYYIQR NNKMNLETKK KSDFISRHVT LPVSLVLESI VATVYWPLRL FFVNLIMHGV 120
  121 ESTAKTPFPM TVDMAIHLYP ILYLLADHYL SGSGTKFKLS NKHAWLIVTS LAFSYFQYLA 180
  181 FLIDAGQGQA YPYPFLDVNE PYKSIIFVVV ATITWAYYVF YQKFPPKYIK KSAKKGDKN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [73-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KMNLETKKKS DFISRHVTLP VSLVLESIVA TVYWPLRLFF VNLIMHGVES TAKTPFPMTV  60
   61 DMAIHLYPIL YLLADHYLSG SGTKFKLSNK HAWLIVTSLA FSYFQYLAFL IDAGQGQAYP 120
  121 YPFLDVNEPY KSIIFVVVAT ITWAYYVFYQ KFPPKYIKKS AKKGDKN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits