YRC Public Data Repository - Protein Structure Prediction

Protein:	FUR1
Organism:	Saccharomyces cerevisiae
Length:	251 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FUR1.

Description	E-value	Query Range	Subject Range
gi\|7546185 - gi\|7546185\|gb\|AAB19947.2\| uracil phosphoribosyl transferase; UPRTase [Saccharomyces cerevisiae]	7.0E-82	[1..251]	[1..250]
UPP_LACLA - Uracil phosphoribosyltransferase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=upp PE=3 SV=... UPP_LACLA - Uracil phosphoribosyltransferase OS=Lactococcus lactis subsp. lactis GN=upp PE=3 SV=1	2.0E-69	[45..250]	[4..209]
UPP_LACLM - Uracil phosphoribosyltransferase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=upp PE=3 S... gi\|599847 - gi\|599847\|emb\|CAA51755.1\| uracil phosphoribosyltransferase [Lactococcus lactis] UPP_LACLC - Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase) - Lactococcus lactis...	2.0E-69	[45..250]	[4..209]
UPP_STRSL - Uracil phosphoribosyltransferase OS=Streptococcus salivarius GN=upp PE=3 SV=1 gi\|228476631, gi... - gi\|228476631\|ref\|ZP_04061313.1\| uracil phosphoribosyltransferase [Streptococcus salivarius SK126], g...	1.0E-68	[45..250]	[4..207]
UPP_STRP3 - Uracil phosphoribosyltransferase OS=Streptococcus pyogenes serotype M3 GN=upp PE=3 SV=1 UPP_STRPM - Uracil phosphoribosyltransferase OS=Streptococcus pyogenes serotype M28 GN=upp PE=3 SV=1 UPP_STRP6 - Uracil phosphoribosyltransferase OS=Streptococcus pyogenes serotype M6 GN=upp PE=3 SV=1 UPP_STRP8 - Uracil phosphoribosyltransferase OS=Streptococcus pyogenes serotype M18 GN=upp PE=3 SV=1 UPP_STRP6 - Uracil phosphoribosyltransferase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10... UPP_STRPD - Uracil phosphoribosyltransferase OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=upp PE=... gi\|15674535, gi\|... - gi\|15674535\|ref\|NP_268709.1\| uracil phosphoribosyltransferase [Streptococcus pyogenes M1 GAS], gi\|13... UPP_STRPC - Uracil phosphoribosyltransferase OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=upp PE=... UPP_STRP8 - Uracil phosphoribosyltransferase OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=upp PE=... UPP_STRPY - (P67400) Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase) UPP_STRP3 - Uracil phosphoribosyltransferase OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS31... UPP_STRP1 - Uracil phosphoribosyltransferase OS=Streptococcus pyogenes serotype M1 GN=upp PE=3 SV=1 UPP_STRPF - Uracil phosphoribosyltransferase OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=upp PE=... UPP_STRPG - Uracil phosphoribosyltransferase OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=upp PE=3... UPP_STRPQ - Uracil phosphoribosyltransferase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=upp PE=3 SV... gi\|71910141, gi\|... - gi\|71910141\|ref\|YP_281691.1\| uracil phosphoribosyltransferase [Streptococcus pyogenes MGAS5005], gi\|... UPP_STRPM - Uracil phosphoribosyltransferase OS=Streptococcus pyogenes serotype M28 (strain MGAS6180) GN=upp PE=...	9.0E-68	[47..250]	[6..207]
UPP_LISIN - Uracil phosphoribosyltransferase OS=Listeria innocua GN=upp PE=3 SV=1 UPP_LISIN - Uracil phosphoribosyltransferase OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=upp PE=3 SV=1	2.0E-67	[41..250]	[1..207]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-67	[44..250]	[4..207]
gi\|221231542, gi... - gi\|221231542\|ref\|YP_002510694.1\| uracil phosphoribosyltransferase [Streptococcus pneumoniae ATCC 700... gi\|183603797, gi... - gi\|183603797\|ref\|ZP_02721340.2\| uracil phosphoribosyltransferase [Streptococcus pneumoniae MLV-016],... gi\|242245712, gi... - gi\|242245712\|ref\|ZP_04800149.1\| uracil phosphoribosyltransferase [Streptococcus pneumoniae TCH8431/1... gi\|183574554, gi... - gi\|183603464\|ref\|ZP_02714975.2\| uracil phosphoribosyltransferase [Streptococcus pneumoniae CDC0288-0... gi\|225860720, gi... - gi\|225860720\|ref\|YP_002742229.1\| uracil phosphoribosyltransferase [Streptococcus pneumoniae Taiwan19... gi\|183603304, gi... - gi\|183603304\|ref\|ZP_02711271.2\| uracil phosphoribosyltransferase [Streptococcus pneumoniae CDC1087-0... gi\|172041997, gi... - gi\|172079638\|ref\|ZP_02709797.2\| uracil phosphoribosyltransferase [Streptococcus pneumoniae CDC1873-0... gi\|25286912 - gi\|25286912\|pir\|\|G97953 uracil phosphoribosyltransferase (EC 2.4.2.9) [imported] - Streptococcus pne... gi\|169833877, gi... - gi\|169833877\|ref\|YP_001694208.1\| uracil phosphoribosyltransferase [Streptococcus pneumoniae Hungary1... gi\|15902699, gi\|... - gi\|15902699\|ref\|NP_358249.1\| uracil phosphoribosyltransferase [Streptococcus pneumoniae R6], gi\|1545... gi\|116515358, gi... - gi\|116515358\|ref\|YP_816143.1\| uracil phosphoribosyltransferase [Streptococcus pneumoniae D39], gi\|11...	3.0E-67	[47..250]	[13..214]
UPP_STRPN - Uracil phosphoribosyltransferase OS=Streptococcus pneumoniae GN=upp PE=3 SV=1 UPP_STRPN - Uracil phosphoribosyltransferase OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4...	3.0E-67	[47..250]	[6..207]
gi\|153197156, gi... - gi\|254831039\|ref\|ZP_05235694.1\| uracil phosphoribosyltransferase [Listeria monocytogenes 10403S], gi... gi\|254879136 - gi\|254879136\|ref\|ZP_05251846.1\| uracil phosphoribosyltransferase [Listeria monocytogenes FSL J2-071] gi\|133726206, gi... - gi\|254872228\|ref\|ZP_05244938.1\| uracil phosphoribosyltransferase [Listeria monocytogenes FSL N1-017]... UPP_LISMH - Uracil phosphoribosyltransferase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=upp PE=3 SV... gi\|254853933 - gi\|254853933\|ref\|ZP_05243281.1\| uracil phosphoribosyltransferase [Listeria monocytogenes FSL R2-503] gi\|133729216, gi... - gi\|254828114\|ref\|ZP_05232801.1\| uracil phosphoribosyltransferase [Listeria monocytogenes FSL N3-165]... gi\|224499892 - gi\|224499892\|ref\|ZP_03668241.1\| uracil phosphoribosyltransferase [Listeria monocytogenes Finland 198... gi\|254825339 - gi\|254825339\|ref\|ZP_05230340.1\| uracil phosphoribosyltransferase [Listeria monocytogenes FSL J1-194] UPP_LISMC - Uracil phosphoribosyltransferase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=upp PE=... gi\|47094306, gi\|... - gi\|47094306\|ref\|ZP_00232009.1\| uracil phosphoribosyltransferase [Listeria monocytogenes str. 4b H785... UPP_LISMF - Uracil phosphoribosyltransferase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=upp PE=3 SV... UPP_LISMO - Uracil phosphoribosyltransferase OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e... gi\|47096960, gi\|... - gi\|47096960\|ref\|ZP_00234536.1\| uracil phosphoribosyltransferase [Listeria monocytogenes str. 1/2a F6... UPP_LISMO - Uracil phosphoribosyltransferase OS=Listeria monocytogenes GN=upp PE=3 SV=1 gi\|255519766 - gi\|255519766\|ref\|ZP_05387003.1\| uracil phosphoribosyltransferase [Listeria monocytogenes FSL J1-175] gi\|255024037 - gi\|255024037\|ref\|ZP_05296023.1\| uracil phosphoribosyltransferase [Listeria monocytogenes FSL J1-208] gi\|254937819 - gi\|254937819\|ref\|ZP_05269516.1\| uracil phosphoribosyltransferase [Listeria monocytogenes F6900] UPP_LISW6 - Uracil phosphoribosyltransferase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / ... gi\|254932220 - gi\|254932220\|ref\|ZP_05265579.1\| uracil phosphoribosyltransferase [Listeria monocytogenes HPB2262] gi\|126942397, gi... - gi\|254900323\|ref\|ZP_05260247.1\| uracil phosphoribosyltransferase [Listeria monocytogenes J0161], gi\|... gi\|254913438 - gi\|254913438\|ref\|ZP_05263450.1\| uracil phosphoribosyltransferase [Listeria monocytogenes J2818] UPP_LISMC - Uracil phosphoribosyltransferase OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=upp PE=...	5.0E-67	[41..250]	[1..207]

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Predicted Domain #1

Region A:
Residues: [1-251]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPLFFLASP FLYLTYLIYY PNKGSFVSKP RNLQKMSSEP FKNVYLLPQT NQLLGLYTII  60
   61 RNKNTTRPDF IFYSDRIIRL LVEEGLNHLP VQKQIVETDT NENFEGVSFM GKICGVSIVR 120
  121 AGESMEQGLR DCCRSVRIGK ILIQRDEETA LPKLFYEKLP EDISERYVFL LDPMLATGGS 180
  181 AIMATEVLIK RGVKPERIYF LNLICSKEGI EKYHAAFPEV RIVTGALDRG LDENKYLVPG 240
  241 LGDFGDRYYC V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	745.0
Match:	1bd3D_
Description:	Uracil PRTase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits