YRC Public Data Repository - Protein Structure Prediction

Protein:	COX23
Organism:	Saccharomyces cerevisiae
Length:	151 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COX23.

Description	E-value	Query Range	Subject Range
COX23_CANGA - Cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Candida glabrata (strain ATCC 2001 / CB... COX23_CANGA - Cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Candida glabrata GN=COX23 PE=3 SV=1	125.0	[0..59]	[150..19]
COX23_KLULA - Cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Kluyveromyces lactis GN=COX23 PE=3 SV=1 COX23_KLULA - Cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 ...	123.0	[0..60]	[151..31]
COX23_ASHGO - Cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Ashbya gossypii GN=COX23 PE=3 SV=1 COX23_ASHGO - Cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CB...	108.0	[0..45]	[150..2]
gi\|73999401 - gi\|73999401\|ref\|XP_851609.1\| PREDICTED: similar to coiled-coil-helix-coiled-coil-helix domain contai...	95.0	[0..102]	[149..89]
COX23_YARLI - Cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Yarrowia lipolytica GN=COX23 PE=3 SV=1 COX23_YARLI - Cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / ...	88.0	[0..52]	[151..22]
gi\|109086473 - gi\|109086473\|ref\|XP_001088006.1\| PREDICTED: similar to coiled-coil-helix-coiled-coil-helix domain co...	87.0	[0..102]	[146..144]
CHCH7_MACFA - Coiled-coil-helix-coiled-coil-helix domain-containing protein 7 OS=Macaca fascicularis GN=CHCHD7 PE=...	85.0	[0..102]	[146..14]
gi\|119607185, gi... - gi\|68084462\|gb\|AAH02546.2\| Coiled-coil-helix-coiled-coil-helix domain containing 7 [Homo sapiens], g... ENSPTRT00000049678 - null	83.0	[0..102]	[146..26]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKPSPTRRQ TSSLSTISNG MTMTNDNRDT TNTNSGSTSS NNSQPSSSST PPAASGPVTD  60
   61 RTKVNYVPKS DDPSSFQYYP DDPENPVNKY KFALKADSQY YDPCEESSKL SFQCLERNDY 120
  121 DRSKCQEYFD AYRECKKQWL TARRKNRQQW E

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits