YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: ERP5
Organism: Saccharomyces cerevisiae
Length: 212 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ERP5.

Description E-value Query
Range
Subject
Range
TMED4_MOUSE - Transmembrane emp24 domain-containing protein 4 OS=Mus musculus GN=Tmed4 PE=1 SV=1
9.0E-63 [1..212] [9..227]
gi|17064083 - gi|17064083|gb|AAL35268.1|AF441399_1 p25 [Homo sapiens]
4.0E-60 [9..212] [4..214]
CE24533 - status:Confirmed UniProt:Q9U1Z4 protein_id:CAB60397.1
2.0E-58 [9..212] [4..211]
TMEDA_MESAU - Transmembrane protein Tmp21 OS=Mesocricetus auratus GN=TMED10 PE=1 SV=1
7.0E-58 [9..212] [19..218]
TMEDA_RABIT - Transmembrane emp24 domain-containing protein 10 OS=Oryctolagus cuniculus GN=TMED10 PE=1 SV=1
9.0E-58 [9..212] [19..218]
TMEDA_RAT - Transmembrane emp24 domain-containing protein 10 OS=Rattus norvegicus GN=Tmed10 PE=1 SV=2
1.0E-56 [9..212] [3..202]

Back

Predicted Domain #1
Region A:
Residues: [1-212]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYNIVHGIC LLFAITQAVG AVHFYAKSGE TKCFYEHLSR GNLLIGDLDL YVEKDGLFEE  60
   61 DPESSLTITV DETFDNDHRV LNQKNSHTGD VTFTALDTGE HRFCFTPFYS KKSATLRVFI 120
  121 ELEIGNVEAL DSKKKEDMNS LKGRVGQLTQ RLSSIRKEQD AIREKEAEFR NQSESANSKI 180
  181 MTWSVFQLLI LLGTCAFQLR YLKNFFVKQK VV

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 89.79588
Match: PF01105
Description: emp24/gp25L/p24 family/GOLD

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [124-212]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IGNVEALDSK KKEDMNSLKG RVGQLTQRLS SIRKEQDAIR EKEAEFRNQS ESANSKIMTW  60
   61 SVFQLLILLG TCAFQLRYLK NFFVKQKVV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle